DreEX6083971 @ danRer10
Exon Skipping
Gene
ENSDARG00000006527 | brd3a
Description
bromodomain containing 3a [Source:ZFIN;Acc:ZDB-GENE-030131-6141]
Coordinates
chr21:18229790-18233160:-
Coord C1 exon
chr21:18232943-18233160
Coord A exon
chr21:18232566-18232849
Coord C2 exon
chr21:18229790-18230359
Length
284 bp
Sequences
Splice sites
3' ss Seq
GTGCTTGGAACTTTTCTCAGGCA
3' ss Score
5.11
5' ss Seq
CACGTAAGT
5' ss Score
10.16
Exon sequences
Seq C1 exon
CTGAAAGCCGTCCACGAACAGCTAGCTGCTCTTTCTCAGGCCCCTGTAAGTAAACCAAAGAAAAAGAAAGAGAAGAAAGAAAAAGATAAGAAAAAGAAAGAGAACAAGCACAACAAATCCAAGCCAGAGGAAAAAGCCAAGCCGGGACAGCCACCGAAACCAGCCCAGCAGAAAAAGGGTCCCACCAGAAAGGCTAACAGCACTGTTCCAGGAAACAG
Seq A exon
GCAACCAAAGAAGGGTGGCAGAGGGCCAGGCTATGAGTCTGACGAGGAGATGTCGCTCCCCATGACGTACGATGAGAAACGGCAACTGAGCCTCGACATTAACCGGCTGCCTGGAGAGAAGCTGGGTCGGGTGGTCCATATTATTCAGTCCAGAGAGCCTTCGCTGCGTGATTCCAACCCTGATGAAATTGAAATAGATTTTGAGACGCTGAAACCTTCCACTTTGCGAGAGCTGGAGCGATACGTCAAGTCCTGTTTACAAAAGAAACAGAGGAAACCTCCAC
Seq C2 exon
AGAAAGGAGGTTCTGGTCCGTCTCGGCTCAGCGGCAGCAGCAGTTCCTCAGACTCGGGGAGCAGCAGCTCCAGTGGCTCCACTTCAGACAGCAGTGACTCCGACTGAACACCTTTTTATTTACTTTTTTATTTTTATTTTTTTTTAAAAACATTGTATGCAGTCAAGGTTGTTTCCCCTCTGAGACTTTTTATAAGAAAGAAAGAAAAGAGACAATAAAAATGCATCATGTCAGAATTTTTTTTTTCTCTTGGAAATGTCATGAAGAAAATTACAGATTAAAAAAGCAAATTAATAGATTGCTTTTTATTTCCACTGACTCTGAAAGGGATGTCCTGAAGCTGCAAAGAGAGGAAGTCAGTAATTCTCTTCCCTGGCATCCTGGTAATGTTGTACGTTACCATCGCAAAATAAAGCATCCCATCTCACCAGAGAGAGCAGAAAACTGAATGCTCACACTCTTCTCTCCTGATTCAACTTCTGCACCGCTCTGTGTTGTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006527-'18-17,'18-16,20-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.990 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAGCTGCTCTTTCTCAGGC
R:
GTTCAGTCGGAGTCACTGCTG
Band lengths:
307-591
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]