BtaEX6047399 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010582 | BRD3
Description
Bos taurus bromodomain containing 3 (BRD3), mRNA. [Source:RefSeq mRNA;Acc:NM_001076873]
Coordinates
chr11:104862492-104868698:-
Coord C1 exon
chr11:104868475-104868698
Coord A exon
chr11:104863856-104864148
Coord C2 exon
chr11:104862492-104862620
Length
293 bp
Sequences
Splice sites
3' ss Seq
CCCCTTGCCTTCTGCCTCAGACA
3' ss Score
8.46
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
CTGAAGGCTGTGCACGAGCAGCTGGCGGCTCTGTCTCAGGCGCCGGTGAACAAGCCAAAGAGGAAGAAGGAGAAGAAGGAGAAGAAGAAGAAGGACAAGGACAAGGAGCGGCACAAGGCCAAGGCCGAGGAGGAGAAGCGGGCCAAGGCCGCCACGCCCGCCAAGCAGGCCCCGCAGAAGAAGGCGCCCGCCAAGAAGGCCAACAGCACCAGCGCGGCCGGCAG
Seq A exon
ACAGCCGAAGAAGGGCGGCAAGCAGGCATCGGCCTCCTACGACTCGGAGGAAGAGGAGGAGGGGCTGCCCATGAGCTATGATGAGAAGCGGCAGCTGAGCCTGGACATCAACCGGCTCCCTGGGGAGAAGCTGGGCCGCGTGGTGCACATCATCCAGTCGCGGGAGCCCTCGCTGCGGGACTCCAACCCCGACGAGATCGAGATCGACTTCGAGACCCTGAAGCCCACCACGCTGCGGGAGCTGGAGAGATACGTCAAGTCTTGTTTACAGAAAAAGCAAAGGAAGCCGTTCT
Seq C2 exon
CCACGAGCGGGAAGAAGCAGGCGGCCAAGTCGAAGGAGGAGCTGGCTCAGGAGAAGAAGAAGGAGCTGGAGAGGCGGCTGCAGGATGTCAGTGGGCAGCTGAGCAACAGCAAGAAGCCAGCCAAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010582-'11-18,'11-16,14-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.929 C2=1.000
Domain overlap (PFAM):
C1:
PF112443=Med25_NR-box=PU(50.0=40.0)
A:
PF112443=Med25_NR-box=PD(48.3=29.3),PF084185=Pol_alpha_B_N=PU(31.4=37.4)
C2:
PF084185=Pol_alpha_B_N=FE(36.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTGAACAAGCCAAAGAGGA
R:
TGGCTTCTTGCTGTTGCTCAG
Band lengths:
300-593
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]