BtaEX6047519 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021861 | COBRA1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G5E5S2]
Coordinates
chr11:105843920-105846463:-
Coord C1 exon
chr11:105846321-105846463
Coord A exon
chr11:105846141-105846247
Coord C2 exon
chr11:105843920-105844061
Length
107 bp
Sequences
Splice sites
3' ss Seq
CTGACGGCGCTGGGGTGCAGGTT
3' ss Score
2.59
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
GAGGTGGAGCTGGTCACCAGGTTCCTGCCCATGCTCATGTCCTTCGTGGTGGACGACCACACCTTCAACGTGGATCAGAAGCTCCCAGCCGAGGAGAAGGCCCCGGTCACGTACCCAAACACGCTGCCGGAGAGCTTCACCAA
Seq A exon
GTTCCTGCAGGAGCAGCGCATGGCCTGCGAAGTGGGGCTGTACTACGTGCTGCACATCACCAAGCAGAGGAATAAGAACGCACTGCTGCGCCTGCTGCCGGGGCTCG
Seq C2 exon
TGGAGACCTTCGGCGACCTGGCGTTCGGGGACATCTTCCTGCACCTGCTCACGGGCAGCCTGGCCCTGCTGGCCGACGAGTTCGCCCTGGAGGACTTCTGCAGCAGCCTCTTCGACGGCTTCCTCCTCACCGCCTCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021861-'11-18,'11-16,12-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF062098=COBRA1=FE(9.9=100)
A:
PF062098=COBRA1=FE(7.6=100)
C2:
PF062098=COBRA1=FE(9.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCTCATGTCCTTCGTGGT
R:
GAGGAGGAAGCCGTCGAAGAG
Band lengths:
242-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]