RnoEX6015797 @ rn6
Exon Skipping
Gene
ENSRNOG00000009377 | Nelfb
Description
negative elongation factor complex member B [Source:RGD Symbol;Acc:1307832]
Coordinates
chr3:2415754-2423527:-
Coord C1 exon
chr3:2423385-2423527
Coord A exon
chr3:2423174-2423280
Coord C2 exon
chr3:2415754-2415895
Length
107 bp
Sequences
Splice sites
3' ss Seq
CCATGGCTTCTCTCATGCAGGTT
3' ss Score
9.04
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GAGGCAGAGCTCATCACCAAGTTCCTGCCGATGCTCATGTCCTTCGTGGTGGATGACTACACTTTCAACGTAGATCAGAAGCTTCCAGCTGAGGAGAAAGCCCCAGTCACATATCCCAACACGCTTCCTGAAAGCTTCACCAA
Seq A exon
GTTTCTGCAGGAGCAGCGCATGGCTTGTGAGGTGGGACTGTACTATGTTCTACACATCACCAAGCAGAGAAACAAGAATGCTCTCCTGCGCCTGCTGCCTGGTCTTG
Seq C2 exon
TGGAAACCTTTGGTGACCTGGCCTTCAGTGACATCTTCCTCCACCTACTCACTGGGAGTCTGGCGCTGTTGGCTGATGAATTTGCCCTGGAGGACTTTTGCAGCAGCCTCTTTGATGGCTTCTTCCTCACTGCCTCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009377-'14-26,'14-21,15-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF062098=COBRA1=FE(9.9=100)
A:
PF062098=COBRA1=FE(7.6=100)
C2:
PF062098=COBRA1=FE(9.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTTCCTGCCGATGCTCATG
R:
GAAGCCATCAAAGAGGCTGCT
Band lengths:
247-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]