GgaEX1016197 @ galGal4
Exon Skipping
Gene
ENSGALG00000008532 | COBRA1
Description
negative elongation factor B [Source:RefSeq peptide;Acc:NP_001006202]
Coordinates
chr17:1904727-1907045:+
Coord C1 exon
chr17:1904727-1904869
Coord A exon
chr17:1905840-1905946
Coord C2 exon
chr17:1906904-1907045
Length
107 bp
Sequences
Splice sites
3' ss Seq
CTTTGTTTCTTCTGTAACAGATT
3' ss Score
9.55
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GAAGCTGAGTTGATCACGAAGTTCTTGCCTATGCTGATGTCCTTTGTGGTGGATGATCACACGTTCAATGTAGATCAGAAACTGCCCTCGGAGGAAAAGGGGCCGATTCCCTACCCCAGCACCATTCCTGAGGCTTTCACCAA
Seq A exon
ATTCTTGCAGGAGAACAGAATAGCTTGTGAGATTGGGCTATACTATATCCTTCACATAACTAAACAGAGGAACAAGAATGCTTTCCTCAGACTCCTGCCAGCACTAG
Seq C2 exon
TCGAGACATTCAGCGACTTGGCCTTCAGTGATATATTTCTGCATCTGCTCACTGGTAACCTCACACTGCTGGGTGATGAATTTGCAGTTGAAGAGTTCTGCACCAGTCTCTTTGATGGCTTCTTTCTCACTGCATGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008532-'15-19,'15-17,16-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF062098=COBRA1=FE(10.0=100)
A:
PF062098=COBRA1=FE(10.4=100)
C2:
PF062098=COBRA1=FE(10.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGATGTCCTTTGTGGTGG
R:
GCATGCAGTGAGAAAGAAGCC
Band lengths:
249-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]