MmuEX6099419 @ mm9
Exon Skipping
Gene
ENSMUSG00000013465 | Cobra1
Description
cofactor of BRCA1 [Source:MGI Symbol;Acc:MGI:1931035]
Coordinates
chr2:25056565-25059010:-
Coord C1 exon
chr2:25058868-25059010
Coord A exon
chr2:25058661-25058767
Coord C2 exon
chr2:25056565-25056706
Length
107 bp
Sequences
Splice sites
3' ss Seq
CCATGGCTTCTTGTATGCAGGTT
3' ss Score
6.68
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GAGGCAGAGCTCATCACCAAGTTCCTGCCGATGCTCATGTCCCTCGTGGTGGATGACTTCACTTTCAACGTAGATCAGAAGCTTCCAGCTGAGGAGAAAGCCTCAGTCACATACCCCAACACACTTCCTGAGAGTTTCACCAA
Seq A exon
GTTTCTGCAGGAGCAGCGCATGGCTTGTGAGGTGGGACTATACTACGTCCTACACATCACCAAGCAGAGAAACAAGAATGCTCTCCTGCGCCTGCTGCCTGGACTTG
Seq C2 exon
TGGAAACGTTTGGTGACCTGGCCTTCAGTGACATCTTTCTCCACCTGCTCACTGGGAGCCTGGTACTGCTTGCTGATGAATTTGCCCTGGAGGATTTCTGCAGCAGCCTCTTTGATGGCTTCTTCCTCACTGCCTCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000013465-'12-17,'12-16,13-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF062098=COBRA1=FE(15.3=100)
A:
PF062098=COBRA1=FE(24.3=100),PF069126=DUF1275=PU(17.9=27.8)
C2:
PF062098=COBRA1=FE(32.6=100),PF069126=DUF1275=PD(78.6=91.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTTCCTGCCGATGCTCATG
R:
GAAGCCATCAAAGAGGCTGCT
Band lengths:
247-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: