GgaEX1016197 @ galGal3
Exon Skipping
Gene
ENSGALG00000008532 | Q5ZLK9_CHICK
Description
NA
Coordinates
chr17:2309846-2312164:+
Coord C1 exon
chr17:2309846-2309988
Coord A exon
chr17:2310959-2311065
Coord C2 exon
chr17:2312023-2312164
Length
107 bp
Sequences
Splice sites
3' ss Seq
CTTTGTTTCTTCTGTAACAGATT
3' ss Score
9.55
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GAAGCTGAGTTGATCACGAAGTTCTTGCCTATGCTGATGTCCTTTGTGGTGGATGATCACACGTTCAATGTAGATCAGAAACTGCCCTCGGAGGAAAAGGGGCCGATTCCCTACCCCAGCACCATTCCTGAGGCTTTCACCAA
Seq A exon
ATTCTTGCAGGAGAACAGAATAGCTTGTGAGATTGGGCTATACTATATCCTTCACATAACTAAACAGAGGAACAAGAATGCTTTCCTCAGACTCCTGCCAGCACTAG
Seq C2 exon
TCGAGACATTCAGCGACTTGGCCTTCAGTGATATATTTCTGCATCTGCTCACTGGTAACCTCACACTGCTGGGTGATGAATTTGCAGTTGAAGAGTTCTGCACCAGTCTCTTTGATGGCTTCTTTCTCACTGCATGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008532-'11-12,'11-10,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF062098=COBRA1=FE(10.0=100)
A:
PF062098=COBRA1=FE(7.6=100)
C2:
PF062098=COBRA1=FE(10.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGATGTCCTTTGTGGTGG
R:
GCATGCAGTGAGAAAGAAGCC
Band lengths:
249-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]