BtaEX6047529 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000046379 | SLC34A3
Description
solute carrier family 34 (type II sodium/phosphate cotransporter), member 3 [Source:HGNC Symbol;Acc:HGNC:20305]
Coordinates
chr11:105868381-105868989:-
Coord C1 exon
chr11:105868846-105868989
Coord A exon
chr11:105868665-105868776
Coord C2 exon
chr11:105868381-105868576
Length
112 bp
Sequences
Splice sites
3' ss Seq
CTGACGCAGCGCCCCCACAGTGC
3' ss Score
1.88
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GCAAAGTAACCGGAGACATCTTCAAGGATAACGTGGTGCTGTCCAACCCTGTGGCTGGACTGGTCATTGGCGTGCTGGTCACAGTCCTGGTGCAGAGCTCCAGCACGTCCTCCTCCATCGTGGTCAGCATGGTGGCCTCCAAGC
Seq A exon
TGCTGACCGTCCGGGCCTCTGTGCCCATCATCATGGGTGTCAACGTGGGCACATCCATCACCAGCACCCTGGTCTCGATGGCACAGTCAGGGGACCGGGACGAGTTTCGGAG
Seq C2 exon
AGCCTTCGGCGGCTCGGCTGTGCACGGCATCTTCAACTGGCTCACGGCGCTGGTCCTGCTGCCGCTGGAGAGTGCCGCGGCCCCCCTGGAGAGGCTCAGTGCGCTGATCCTGGGCACCGCCAGCCTGCAGCCGGGGGGGCACACGCCCGACATCCTCAAGGTGCTGACCCGGCCGCTCACACACCTCATCGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046379-'5-10,'5-7,6-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(32.7=100)
A:
PF0269010=Na_Pi_cotrans=FE(25.2=100)
C2:
PF0269010=Na_Pi_cotrans=PD(29.9=66.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACTGGTCATTGGCGTG
R:
GTCAGCACCTTGAGGATGTCG
Band lengths:
258-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]