RnoEX6015804 @ rn6
Exon Skipping
Gene
ENSRNOG00000010451 | Slc34a3
Description
solute carrier family 34 member 3 [Source:RGD Symbol;Acc:708551]
Coordinates
chr3:2451262-2451874:-
Coord C1 exon
chr3:2451731-2451874
Coord A exon
chr3:2451545-2451656
Coord C2 exon
chr3:2451262-2451457
Length
112 bp
Sequences
Splice sites
3' ss Seq
TTAAAATGGTACCCCTACAGTGC
3' ss Score
4.95
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GCAAGATGGCCGGAGACATTTTTAAGGACAATGTGGTGCTGTCCAACCCTGTGGCTGGCTTGGTCATTGGTGTGGTGGTCACCGTCCTTGTACAGAGCTCCAGCACATCTTCCTCTATCGTGGTCAGCATGGTGGCCTCTAAGT
Seq A exon
TGCTGACTGTCCAAGCGTCTGTCCCTATCATCATGGGCGTCAACGTGGGCACTTCCATCACCAGCACTCTGGTCTCGATGGCACAGTCAGGGGATCGGGATGAATTTCAGAG
Seq C2 exon
GGCCTTCGGCGGCTCGGCCGTGCACGGCATCTTCAACTGGCTCACAGTGTTGGTACTGCTGCCACTGGAGAATGCCACTGCGGCACTAGAGAGACTGAGTGAGCTGGCCCTGGGTGCTGCTAGCCTGCAGCCAGGGGGGCAGGCCCCCGACATCCTCAAGGCACTGACTCGACCTTTCACACACCTCATCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010451-'11-14,'11-12,12-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(32.9=100)
A:
PF0269010=Na_Pi_cotrans=FE(25.3=100)
C2:
PF0269010=Na_Pi_cotrans=PD(29.5=65.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGTCATTGGTGTGGTGGT
R:
GTCAGTGCCTTGAGGATGTCG
Band lengths:
254-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]