HsaEX6064256 @ hg38
Exon Skipping
Gene
ENSG00000198569 | SLC34A3
Description
solute carrier family 34 member 3 [Source:HGNC Symbol;Acc:HGNC:20305]
Coordinates
chr9:137232784-137233404:+
Coord C1 exon
chr9:137232784-137232927
Coord A exon
chr9:137233004-137233115
Coord C2 exon
chr9:137233209-137233404
Length
112 bp
Sequences
Splice sites
3' ss Seq
CTCAGCCCCCCCACCAGCAGTGC
3' ss Score
3.23
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GCAAAGTGGCCGGAGACATCTTCAAGGACAACGTGGTGCTGTCCAACCCTGTGGCTGGACTGGTCATTGGCGTGCTGGTCACAGCCCTGGTGCAGAGTTCCAGCACGTCCTCCTCCATCGTGGTCAGCATGGTGGCTGCTAAGC
Seq A exon
TGCTGACTGTCCGGGTGTCTGTGCCCATCATCATGGGTGTCAACGTAGGCACATCCATCACCAGCACCCTGGTCTCAATGGCGCAGTCAGGGGACCGGGATGAATTTCAGAG
Seq C2 exon
GGCTTTCAGCGGCTCGGCGGTGCACGGGATCTTCAACTGGCTCACAGTGCTGGTCCTGCTGCCACTGGAGAGCGCCACGGCCCTGCTGGAGAGGCTAAGTGAGCTAGCCCTGGGTGCCGCCAGCCTGACACCCAGGGCGCAGGCGCCCGACATCCTCAAGGTGCTGACGAAGCCGCTCACACACCTCATCGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198569_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(32.9=100)
A:
PF0269010=Na_Pi_cotrans=FE(25.3=100)
C2:
PF0269010=Na_Pi_cotrans=PD(29.5=65.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCCGGAGACATCTTCAAG
R:
ACCCAGGGCTAGCTCACTTAG
Band lengths:
254-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains