BtaEX6047530 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000046379 | SLC34A3
Description
solute carrier family 34 (type II sodium/phosphate cotransporter), member 3 [Source:HGNC Symbol;Acc:HGNC:20305]
Coordinates
chr11:105868096-105868776:-
Coord C1 exon
chr11:105868665-105868776
Coord A exon
chr11:105868381-105868576
Coord C2 exon
chr11:105868096-105868185
Length
196 bp
Sequences
Splice sites
3' ss Seq
CTGCCTCTGTGTGACTCCAGAGC
3' ss Score
7.01
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
TGCTGACCGTCCGGGCCTCTGTGCCCATCATCATGGGTGTCAACGTGGGCACATCCATCACCAGCACCCTGGTCTCGATGGCACAGTCAGGGGACCGGGACGAGTTTCGGAG
Seq A exon
AGCCTTCGGCGGCTCGGCTGTGCACGGCATCTTCAACTGGCTCACGGCGCTGGTCCTGCTGCCGCTGGAGAGTGCCGCGGCCCCCCTGGAGAGGCTCAGTGCGCTGATCCTGGGCACCGCCAGCCTGCAGCCGGGGGGGCACACGCCCGACATCCTCAAGGTGCTGACCCGGCCGCTCACACACCTCATCGTGCAG
Seq C2 exon
CTGGACGCTGATGTCCTTATGGGCAGTGCCACGGGCAACACCACCAACCGGAGCCTTATTAAGCGATGGTGCGGCACCAGGGAGCAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046379-'6-11,'6-10,7-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(25.2=100)
A:
PF0269010=Na_Pi_cotrans=PD(29.9=66.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCTGTGCCCATCATCATG
R:
GTCTGCTCCCTGGTGCCG
Band lengths:
187-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]