RnoEX6015805 @ rn6
Exon Skipping
Gene
ENSRNOG00000010451 | Slc34a3
Description
solute carrier family 34 member 3 [Source:RGD Symbol;Acc:708551]
Coordinates
chr3:2451021-2451656:-
Coord C1 exon
chr3:2451545-2451656
Coord A exon
chr3:2451262-2451457
Coord C2 exon
chr3:2451021-2451110
Length
196 bp
Sequences
Splice sites
3' ss Seq
CCTGCCCTGTGTGACCGCAGGGC
3' ss Score
9.15
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
TGCTGACTGTCCAAGCGTCTGTCCCTATCATCATGGGCGTCAACGTGGGCACTTCCATCACCAGCACTCTGGTCTCGATGGCACAGTCAGGGGATCGGGATGAATTTCAGAG
Seq A exon
GGCCTTCGGCGGCTCGGCCGTGCACGGCATCTTCAACTGGCTCACAGTGTTGGTACTGCTGCCACTGGAGAATGCCACTGCGGCACTAGAGAGACTGAGTGAGCTGGCCCTGGGTGCTGCTAGCCTGCAGCCAGGGGGGCAGGCCCCCGACATCCTCAAGGCACTGACTCGACCTTTCACACACCTCATCATCCAG
Seq C2 exon
CTGGATAGCAGTGTGGTTACCAGCAGCATTACCAGCAACACCACTAACAGCAGCCTGATTAAGCACTGGTGTGGCTTCAGGGGGGAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010451-'12-15,'12-14,13-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(25.3=100)
A:
PF0269010=Na_Pi_cotrans=PD(29.5=65.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACTGTCCAAGCGTCTGTC
R:
CCCCCTGAAGCCACACCAG
Band lengths:
194-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]