MmuEX0043102 @ mm10
Exon Skipping
Gene
ENSMUSG00000006469 | Slc34a3
Description
solute carrier family 34 (sodium phosphate), member 3 [Source:MGI Symbol;Acc:MGI:2159410]
Coordinates
chr2:25231223-25232062:-
Coord C1 exon
chr2:25231951-25232062
Coord A exon
chr2:25231668-25231863
Coord C2 exon
chr2:25231223-25231310
Length
196 bp
Sequences
Splice sites
3' ss Seq
CCTACCCTGTGTGACTGCAGGGC
3' ss Score
6.91
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
TGCTGACTGTCCAGGTGTCTGTGCCTATCATCATGGGCGTCAATGTGGGTACTTCGATCACCAGCACCCTGGTCTCAATGGCGCAGTCAGGGGACCGGGATGAATTTCAGAG
Seq A exon
GGCCTTCAGCGGCTCGGCCGTGCATGGCATCTTCAACTGGCTCACAGTATTGGTATTGCTGCCGCTGGAGAGTGCCACCGCAGCATTAGAGAGACTGAGTGAGCTGGCCCTGGGTGCTGCTAGCCTGCAGCCAGGGCAGCAGGCCCCCGACATCCTCAAGGCACTGACTCGGCCTTTCACACACCTCATCATCCAG
Seq C2 exon
CCCCAGGGAAGCAGTGAGGGATGTGGCCTCTTCAGCTCTTGCACAGAGAGGAACAGCTCAGCATCTCCAGAGGAGGACAGATTGCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006469_MULTIEX1-3/5=2-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(25.3=100)
A:
PF0269010=Na_Pi_cotrans=PD(29.5=65.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACTGTCCAGGTGTCTGTG
R:
AGCAATCTGTCCTCCTCTGGA
Band lengths:
196-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types