MmuEX0043103 @ mm10
Exon Skipping
Gene
ENSMUSG00000006469 | Slc34a3
Description
solute carrier family 34 (sodium phosphate), member 3 [Source:MGI Symbol;Acc:MGI:2159410]
Coordinates
chr2:25231223-25231863:-
Coord C1 exon
chr2:25231668-25231863
Coord A exon
chr2:25231421-25231510
Coord C2 exon
chr2:25231223-25231310
Length
90 bp
Sequences
Splice sites
3' ss Seq
GTGCCCCCTTTGTCTACCAGCTG
3' ss Score
8.15
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
Exon sequences
Seq C1 exon
GGCCTTCAGCGGCTCGGCCGTGCATGGCATCTTCAACTGGCTCACAGTATTGGTATTGCTGCCGCTGGAGAGTGCCACCGCAGCATTAGAGAGACTGAGTGAGCTGGCCCTGGGTGCTGCTAGCCTGCAGCCAGGGCAGCAGGCCCCCGACATCCTCAAGGCACTGACTCGGCCTTTCACACACCTCATCATCCAG
Seq A exon
CTGGATAGCAGTGTGATAACCAGCGGTATTACCAGCAACACCACTAACAGCAGCCTGATTAAGCATTGGTGTGGCTTCAGGGGGGAGACG
Seq C2 exon
CCCCAGGGAAGCAGTGAGGGATGTGGCCTCTTCAGCTCTTGCACAGAGAGGAACAGCTCAGCATCTCCAGAGGAGGACAGATTGCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006469_MULTIEX1-4/5=3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PD(29.5=65.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAGACTGAGTGAGCTGGC
R:
TGCTGAGCTGTTCCTCTCTGT
Band lengths:
172-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types