RnoEX6015806 @ rn6
Exon Skipping
Gene
ENSRNOG00000010451 | Slc34a3
Description
solute carrier family 34 member 3 [Source:RGD Symbol;Acc:708551]
Coordinates
chr3:2450820-2451457:-
Coord C1 exon
chr3:2451262-2451457
Coord A exon
chr3:2451021-2451110
Coord C2 exon
chr3:2450820-2450907
Length
90 bp
Sequences
Splice sites
3' ss Seq
GTGCCCTCTTTGTCTACCAGCTG
3' ss Score
8.3
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
Exon sequences
Seq C1 exon
GGCCTTCGGCGGCTCGGCCGTGCACGGCATCTTCAACTGGCTCACAGTGTTGGTACTGCTGCCACTGGAGAATGCCACTGCGGCACTAGAGAGACTGAGTGAGCTGGCCCTGGGTGCTGCTAGCCTGCAGCCAGGGGGGCAGGCCCCCGACATCCTCAAGGCACTGACTCGACCTTTCACACACCTCATCATCCAG
Seq A exon
CTGGATAGCAGTGTGGTTACCAGCAGCATTACCAGCAACACCACTAACAGCAGCCTGATTAAGCACTGGTGTGGCTTCAGGGGGGAGACG
Seq C2 exon
CCCCAGGGAAGCAGTGAGGAATGCGACCTCTCGGGCTCTTGCACAGAGAGGAACAGCTCAGCATCTCCAGGAGAGGACAGACTGCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010451-'13-16,'13-15,14-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.167
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PD(29.5=65.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAGACTGAGTGAGCTGGC
R:
TGCTGAGCTGTTCCTCTCTGT
Band lengths:
172-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]