BtaEX6047531 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000046379 | SLC34A3
Description
solute carrier family 34 (type II sodium/phosphate cotransporter), member 3 [Source:HGNC Symbol;Acc:HGNC:20305]
Coordinates
chr11:105867913-105868576:-
Coord C1 exon
chr11:105868381-105868576
Coord A exon
chr11:105868096-105868185
Coord C2 exon
chr11:105867913-105868000
Length
90 bp
Sequences
Splice sites
3' ss Seq
CCCGGATCCTCTGTCCCCAGCTG
3' ss Score
7.45
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
Exon sequences
Seq C1 exon
AGCCTTCGGCGGCTCGGCTGTGCACGGCATCTTCAACTGGCTCACGGCGCTGGTCCTGCTGCCGCTGGAGAGTGCCGCGGCCCCCCTGGAGAGGCTCAGTGCGCTGATCCTGGGCACCGCCAGCCTGCAGCCGGGGGGGCACACGCCCGACATCCTCAAGGTGCTGACCCGGCCGCTCACACACCTCATCGTGCAG
Seq A exon
CTGGACGCTGATGTCCTTATGGGCAGTGCCACGGGCAACACCACCAACCGGAGCCTTATTAAGCGATGGTGCGGCACCAGGGAGCAGACG
Seq C2 exon
ACCGCGGGAAACAGCAGCTACTGCGGAGCGGCGGCGGGGGGCCCCTGCCCTGGGAAGAACGGCTCTGCGTCTGAGGAGCCCTTGCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046379-'7-12,'7-11,8-12=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.133
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PD(29.9=66.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTGCGCTGATCCTGGG
R:
CAGACGCAGAGCCGTTCTTC
Band lengths:
174-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]