BtaEX6047538 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047061 | NDOR1
Description
Bos taurus NADPH dependent diflavin oxidoreductase 1 (NDOR1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046158]
Coordinates
chr11:105885152-105886263:-
Coord C1 exon
chr11:105886043-105886263
Coord A exon
chr11:105885368-105885475
Coord C2 exon
chr11:105885152-105885266
Length
108 bp
Sequences
Splice sites
3' ss Seq
CCCTGCCGCTGTCCCCCCAGGTG
3' ss Score
12.42
5' ss Seq
CGGGTGAGA
5' ss Score
7.62
Exon sequences
Seq C1 exon
GTGTCACCTGCCCTACGCGGCTGCCCCAGCCCTGCTCCGTGCGGCGCCTCGTGTCCCAGTACCTGGACATCGCCAGTGTCCCCCGCCGCTCCTTCTTTGAACTTCTGGCCTGTCTCTCCCCCCACGAGCTGGAGCGGGAGAAGCTTTGGGAATTCGGCTCTGCACGGGGCCAGGAGGAGCTTTGCGAGTACTGCACCCGGCCCCGCAGGACGGCCCTGGAG
Seq A exon
GTGCTGTGCGACTTCCCCCACACAGCTGCTGCTGTCCCCCCAGACTACCTGCTGGACCTGCTGCCCCTGATCCGGCCCCGGGCCTTCTCCATCGCCTCCTCTCTGCGG
Seq C2 exon
GCCCACCCCTCGCGGCTGCAGATCCTGGTGGCCGTGGTGCAGTACCAGACCCGCCTCCGGGAGCCCCGCCGTGGCCTCTGCTCCAGCTGGCTGGCGTCCCTGGACCCTGCGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047061-'13-17,'13-15,14-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0066715=FAD_binding_1=FE(33.0=100)
A:
PF0066715=FAD_binding_1=FE(15.8=100)
C2:
PF0066715=FAD_binding_1=PD(13.1=74.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCTGGACATCGCCAGTGTC
R:
AGCCAGCTGGAGCAGAGG
Band lengths:
254-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]