DreEX0049791 @ danRer10
Exon Skipping
Gene
ENSDARG00000007429 | ndor1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1555]
Coordinates
chr5:31894335-31896000:+
Coord C1 exon
chr5:31894335-31894549
Coord A exon
chr5:31894756-31894863
Coord C2 exon
chr5:31895886-31896000
Length
108 bp
Sequences
Splice sites
3' ss Seq
CTGATCCTTTTGTTGATCAGGTA
3' ss Score
7.59
5' ss Seq
TTGGTAAAT
5' ss Score
4.94
Exon sequences
Seq C1 exon
AAGTTCCTGCACGTCTTCCTCAGCCCTGCTCTGTTCGTTTTCTGCTGGAACACTTCCTGGACATTTCTGCTGTCCCACGGCGTTCCTTCTTTGAGCTTCTGGCCACTTTTGCCACTGATGAACTGGAGCAGGAAAAACTCTTGGAGTTTAGCTCTGCTGCGGGTCAGGATGCTCTTCACTCCTACTGCAACAGACCTCGCCGAACAGCGATAGAG
Seq A exon
GTACTTACAGACTTCCCTCATACTACAGCAGAGTTGAGCATTGGCTGCTTGCTGGATCTGTTTCCAGAAATTCAGCCTCGCTCCTTCTCTATTGCTTCTTCACTTTTG
Seq C2 exon
GAACACCCTAATCGTATCCAGATCTTGCTTGCTGTGGTGAAGTATAAAACTATGCTCGTAAAGCCACGCAAAGGTCTCTGCTCTTCTTGGCTGGCGTCTCTGGACCCGTCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007429_MULTIEX1-6/6=5-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0066715=FAD_binding_1=FE(32.3=100)
A:
PF0066715=FAD_binding_1=FE(15.9=100)
C2:
PF0066715=FAD_binding_1=PD(13.2=74.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCTGCACGTCTTCCTCAG
R:
ACCACAGCAAGCAAGATCTGG
Band lengths:
251-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]