MmuEX6099441 @ mm10
Exon Skipping
Gene
ENSMUSG00000006471 | Ndor1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:MGI Symbol;Acc:MGI:1926047]
Coordinates
chr2:25248632-25249320:-
Coord C1 exon
chr2:25249100-25249320
Coord A exon
chr2:25248905-25249012
Coord C2 exon
chr2:25248632-25248746
Length
108 bp
Sequences
Splice sites
3' ss Seq
ATAAGACTCCATTTATCCAGGTG
3' ss Score
4.25
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
GTGTCCCTGACCCACCAGGGCTGCCTCAGCCCTGTACTGTGTGGAACCTCGTGTCCCAGTACTTGGACATTGCCAGTGTGCCCCGCCGTTCCTTCTTTGAGCTCCTGGCTTGTCTCTCCCAACATGCGCTGGAGCGAGAGAAGCTGCTGGAATTGAGCTCTGCCAGAGGTCAGGAAGAGCTCTGGGAGTACTGCAGTCGGCCCCGCAGAACCATCTTGGAG
Seq A exon
GTGCTATGCGACTTTCCACATACAGCGGGTGCCATTCCTCCAGACTACCTTTTGGACCTAATCCCTCGGATCCGCCCACGGGCCTTCTCCATTGCTTCCTCCCTACTG
Seq C2 exon
GCTCATCCCAGGAGGCTACAGATCCTTGTGGCTGTGGTAAAGTACCAGACTCGTCTGAAGGAGCCCCGCCATGGTCTCTGCTCCTCCTGGCTAGCATCCCTGAATCCTGGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006471-'16-29,'16-26,17-29=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0066715=FAD_binding_1=FE(33.0=100)
A:
PF0066715=FAD_binding_1=FE(15.8=100)
C2:
PF0066715=FAD_binding_1=PD(13.1=74.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGTTCCTTCTTTGAGCTCC
R:
CTTGCCCAGGATTCAGGGATG
Band lengths:
252-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types