GgaEX0027576 @ galGal3
Exon Skipping
Gene
ENSGALG00000008920 | NDOR1
Description
NA
Coordinates
chr17:1350273-1352476:+
Coord C1 exon
chr17:1350273-1350493
Coord A exon
chr17:1350871-1350978
Coord C2 exon
chr17:1352330-1352476
Length
108 bp
Sequences
Splice sites
3' ss Seq
TGCTCTCCGTGGCTTTGCAGGCC
3' ss Score
9.68
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GCACAGCCCTCCCTGCCCACTTGCTGCAGCCCTGCACCATCCGGCACCTGGTCACCCACTACCTGGACATCTCCTGCGTGCCACGGCGCTCCTTCTTTGAGCTCTTGTCCCACTTCTCTACGAACGAGCTGGAGCGGGAGAAGCTGCAGGAGTTCAGCTCTGCACAGGGCCAGGAAGAGCTGTACAGCTACTGCAACCGGCCTCGCAGGACCACCCTTGAG
Seq A exon
GCCCTCTGGGATTTCCCTCACACCACATCTGCCATTCCACCTGAATACCTGCTGGACCTCATCCCTCGCATCAGACCCCGCGCCTTCTCTATTGCCTCCTCCATGCTG
Seq C2 exon
GTGATGTCCGGGTACCTCTTTGGGTGAAGAAAGGAGGAATGAAGTTCCCAGCTAACCCCGACACTCCTGTGATCATGATTGGCCCTGGCACAGGGGTGGCACCTTTCCGAGCAGCTATACAGGAGCGAGTGGCACAAGGGCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008920_MULTIEX1-8/12=7-10
Average complexity
C3
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0066715=FAD_binding_1=FE(33.3=100)
A:
PF0066715=FAD_binding_1=FE(16.0=100)
C2:
PF0017516=NAD_binding_1=PU(22.4=48.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCACCCACTACCTGGACAT
R:
TCACAGGAGTGTCGGGGTTAG
Band lengths:
244-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]