HsaEX6064244 @ hg38
Exon Skipping
Gene
ENSG00000188566 | NDOR1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:HGNC Symbol;Acc:HGNC:29838]
Coordinates
chr9:137214798-137215521:+
Coord C1 exon
chr9:137214798-137215018
Coord A exon
chr9:137215095-137215202
Coord C2 exon
chr9:137215407-137215521
Length
108 bp
Sequences
Splice sites
3' ss Seq
CTGAGACTCTCTTTGCCTAGGTG
3' ss Score
6.83
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
ATGTCTCCTCCCCCACGAGGCTGCCCCAGCCCTGCTCCATGCGGCACCTCGTGTCCCACTACCTGGACATCGCCAGCGTGCCTCGCCGCTCCTTCTTCGAACTCCTGGCCTGTCTATCCCTCCATGAGCTGGAGCGGGAGAAGCTGCTGGAGTTCAGTTCTGCCCAAGGCCAGGAGGAGCTCTTTGAATACTGCAACCGGCCCCGCAGGACCATCCTGGAG
Seq A exon
GTGCTCTGTGACTTCCCGCACACAGCTGCCGCCATCCCTCCCGACTACCTGTTGGACCTCATCCCCGTTATCCGGCCGAGGGCCTTCTCCATCGCCTCCTCGCTGCTG
Seq C2 exon
ACTCACCCCTCACGGCTGCAGATCCTCGTGGCTGTAGTGCAGTTCCAGACTCGCCTCAAGGAGCCCCGCCGGGGCCTCTGCTCCTCCTGGCTGGCATCCCTGGACCCTGGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188566-'12-23,'12-19,14-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0066715=FAD_binding_1=FE(33.0=100)
A:
PF0066715=FAD_binding_1=FE(15.8=100)
C2:
PF0066715=FAD_binding_1=PD(13.1=74.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACCTCGTGTCCCACTA
R:
CTCCTTGAGGCGAGTCTGGAA
Band lengths:
242-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains