BtaEX6047551 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3N1P6]
Coordinates
chr11:105907708-105909123:-
Coord C1 exon
chr11:105909006-105909123
Coord A exon
chr11:105908233-105908414
Coord C2 exon
chr11:105907708-105907849
Length
182 bp
Sequences
Splice sites
3' ss Seq
CGAGGGCTCGTGTTCACCAGGAC
3' ss Score
5.68
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
GCGTGAACACGTGTGACATCATCACCCTGTACATCTCTGCTATCAAGGCGCTGCGCGTGCTGGACCCGTCCATGGTTGTCCTGGAGGTGGCCTGTGAGCCCATTCGCCGGTACCTGCG
Seq A exon
GACGCGGGAGGACACAGTGCGGCAGATCGTGGCGGGGCTGACGGGGGACTCGGATGGGACGGGCGACTTGGCTGTTGAGCTGTCCAAGACGGACCCTGCGAGCCTAGAGACCGGGCAGGACAGTGAGGACGACTCTGGGGAGCCGGAGGACTGGGTCCCTGACCCTGTGGACGCAGATCCAG
Seq C2 exon
GGAAGTCCAGCTCCAAGCGGCGCTCCTCAGACATCATCAGCCTGCTGGTCAGCATCTATGGCAGCAAGGACCTCTTCATCAATGAGTACCGTTCGCTGCTAGCCGATCGCCTGCTGCACCAGTTCAGCTTCAGCCCTGAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046223-'10-11,'10-10,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.694 C2=0.104
Domain overlap (PFAM):
C1:
PF0088817=Cullin=FE(14.1=100)
A:
PF0088817=Cullin=FE(22.0=100)
C2:
PF0088817=Cullin=FE(17.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAACACGTGTGACATCATCA
R:
CTCAGGGCTGAAGCTGAACTG
Band lengths:
256-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]