RnoEX0009219 @ rn6
Exon Skipping
Gene
ENSRNOG00000011295 | Anapc2
Description
anaphase promoting complex subunit 2 [Source:RGD Symbol;Acc:1305546]
Coordinates
chr3:2495030-2496583:+
Coord C1 exon
chr3:2495030-2495147
Coord A exon
chr3:2495574-2495755
Coord C2 exon
chr3:2496442-2496583
Length
182 bp
Sequences
Splice sites
3' ss Seq
GCAGCATTCAATCCTGGCAGGAC
3' ss Score
4.64
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GTGTCAACACGTGTGACATCATCACACTCTACATTTCTGCCATCAAGGCATTACGTGTGCTAGATCCCTCTATGGTCATCCTGGAGGTGGCCTGTGAGCCCATCCGTCGCTACCTGAG
Seq A exon
GACACGGGAGGACACAGTACGGCAGATTGTGGCTGGGCTAACCGGGGACTCGGATGGGACTGGGGACTTGGCTGTTGAGCTGTCTAAGACTGACCCGGCCTGCCTGGAGACCGGCCAGGACAGTGAGGATGACTCTGGCGAGCCCGAGGACTGGGTCCCTGACCCTGTGGATGCTGATCCAG
Seq C2 exon
CAAAGTCAAGTTCCAAGCGACGCTCTTCAGACATCATCAGCCTGCTGGTCAGCATCTATGGCAGCAAAGACCTGTTTATCAATGAGTACCGCTCCCTCCTGGCCGATCGCCTCCTCCACCAGTTCAGCTTCAGTCCGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011295-'11-9,'11-8,12-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.548 C2=0.083
Domain overlap (PFAM):
C1:
PF0088817=Cullin=FE(10.2=100)
A:
PF0088817=Cullin=FE(16.0=100)
C2:
PF0088817=Cullin=FE(12.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCAACACGTGTGACATCA
R:
TGAAGCTGAACTGGTGGAGGA
Band lengths:
250-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]