DreEX6013476 @ danRer10
Exon Skipping
Gene
ENSDARG00000105035 | anapc2
Description
anaphase promoting complex subunit 2 [Source:ZFIN;Acc:ZDB-GENE-081104-256]
Coordinates
chr5:53918401-53926295:+
Coord C1 exon
chr5:53918401-53918518
Coord A exon
chr5:53918615-53918793
Coord C2 exon
chr5:53926154-53926295
Length
179 bp
Sequences
Splice sites
3' ss Seq
TGTAATGTTGAAAATGATAGAAC
3' ss Score
0.27
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
GAGTCCACACATCTGACATTATTACTGTTTACATCTCTGCCATTAAAGCTTTAAGAGAGCTTGACCCCTCCATGGTCATCTTGCAAGTGGCCTGCCAACCCATTCGTAAATATCTCAG
Seq A exon
AACCCGTGAGGACACTGTGCGCCAGATAGTGGGCAGTCTGACCGGGGATTCGGAGGGATGCACTGATCTGGCTAATGAGCTTTCTCGAGCTGACCCTGTTGCCCTGGAGACACAGGACAGTGAAGATGAGGGGAGTGATCCAGAGGACTGGACTCCAGATCCCACCGATGCACTCACAG
Seq C2 exon
ATAAAACTGGGTCTAAGCGACGTTCTTCTGACATCATCAGTCTGCTGGTCAGCATTTATGGCAGTAAAGAGATCTTCGTTAATGAATACAAGACTGTACTGGCTGACAGACTTCTGCATCAGCTCAACTACAACACAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000105035-'8-12,'8-10,9-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.508 C2=0.083
Domain overlap (PFAM):
C1:
PF0088817=Cullin=FE(6.9=100)
A:
PF0088817=Cullin=FE(10.7=100)
C2:
PF0088817=Cullin=FE(8.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCACACATCTGACATTATTACTGT
R:
TGGCTGTGTTGTAGTTGAGCTG
Band lengths:
257-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]