HsaEX6064234 @ hg19
Exon Skipping
Gene
ENSG00000176248 | ANAPC2
Description
anaphase promoting complex subunit 2 [Source:HGNC Symbol;Acc:19989]
Coordinates
chr9:140075240-140077694:-
Coord C1 exon
chr9:140077577-140077694
Coord A exon
chr9:140076133-140076314
Coord C2 exon
chr9:140075240-140075381
Length
182 bp
Sequences
Splice sites
3' ss Seq
AGCAGCACTCACATCGGCAGGAC
3' ss Score
2.13
5' ss Seq
CAGGTTAGC
5' ss Score
4.9
Exon sequences
Seq C1 exon
GCGTCAACACGTGTGACATCATCACCCTCTATATCTCTGCCATCAAGGCGCTGCGCGTGCTGGACCCTTCCATGGTCATCCTGGAGGTGGCCTGTGAGCCTATCCGCCGCTACCTGAG
Seq A exon
GACGCGGGAGGACACAGTGCGGCAGATTGTGGCTGGGCTGACGGGGGACTCGGACGGGACAGGGGACCTGGCTGTTGAGCTGTCCAAGACCGACCCGGCGAGCCTGGAGACAGGCCAGGACAGTGAGGATGACTCAGGCGAGCCAGAGGACTGGGTCCCGGACCCTGTGGATGCCGATCCAG
Seq C2 exon
GGAAGTCGAGCTCCAAGCGGCGTTCATCGGACATCATCAGCCTGCTGGTCAGCATCTACGGCAGCAAGGACCTCTTCATCAATGAGTACCGCTCGCTGCTGGCCGACCGCCTGCTGCACCAGTTCAGCTTCAGCCCCGAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176248-'8-13,'8-11,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.694 C2=0.104
Domain overlap (PFAM):
C1:
PF0088817=Cullin=FE(10.2=100)
A:
PF0088817=Cullin=FE(16.0=100)
C2:
PF0088817=Cullin=FE(12.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCAACACGTGTGACATCAT
R:
GAAGCTGAACTGGTGCAGCAG
Band lengths:
248-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)