GgaEX6014830 @ galGal3
Exon Skipping
Gene
ENSGALG00000008625 | F1NLT0_CHICK
Description
NA
Coordinates
chr17:2192115-2192768:+
Coord C1 exon
chr17:2192115-2192232
Coord A exon
chr17:2192310-2192491
Coord C2 exon
chr17:2192627-2192768
Length
182 bp
Sequences
Splice sites
3' ss Seq
TATCTCTCACCTTTTGGCAGGAC
3' ss Score
7.5
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GTGTCAACACCTCCGACATCATCACGTTGTATATCTCAGCCATCAAGGCCCTGCGGGAGCTGGACCCCTCCATGGTTATCCTGGAGGTCGCCTGTGAGCCCATCAGGAAGTACCTGAG
Seq A exon
GACACGGGAGGACACCGTGCGGCAGATCGTGGCCGGTCTCACGGGGGATGCTGAGGGCTCCGGGGATCTGGCAAATGAGCTCTCGAAAGCTGACCCTGTGACACTGGAGAATGGCCAGGAGAGTGATGATGACATCTCAGAACCAGGGGACTGGGTACCTGACCCAGTTGATGCAGATCCAG
Seq C2 exon
GGAAATCGAGTTCCAAGCGCCGGTCCTCAGACATCATCAGCCTGCTGGTGAGCATCTATGGCAGCAAGGACCTGTTTATCAACGAGTACCGCACGCTCCTGGCTGACCGGCTGCTGCATCAGTTCAACTACAGTGCTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008625-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.581 C2=0.104
Domain overlap (PFAM):
C1:
NO
A:
PF0088817=Cullin=PU(2.4=9.7)
C2:
PF0088817=Cullin=FE(18.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACCTCCGACATCATCACG
R:
AGTTGAACTGATGCAGCAGCC
Band lengths:
242-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]