BtaEX6047575 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000046775 | MAN1B1
Description
mannosidase, alpha, class 1B, member 1 [Source:HGNC Symbol;Acc:HGNC:6823]
Coordinates
chr11:106126804-106130705:-
Coord C1 exon
chr11:106130517-106130705
Coord A exon
chr11:106127442-106127632
Coord C2 exon
chr11:106126804-106126924
Length
191 bp
Sequences
Splice sites
3' ss Seq
CGCCCCCACCGTCTGCCCAGGAG
3' ss Score
6.53
5' ss Seq
GCAGTGAGG
5' ss Score
2.19
Exon sequences
Seq C1 exon
GAGGATTTTGGAAATCGGTTAATGCCTGCCTTCCGAACACCCTCTAAGATTCCATACTCCATGGTAAACATTGGCACTGGAGTTGCTCACCCACCCCGATGGACCTCTGATAGCACGGTGGCTGAGGTGACAAGCATTCAGCTGGAGTTCCGAGAGCTCTCTCGTCTCACGGGGGATAAGAAATTTCAG
Seq A exon
GAGGCTGCAGAGGAGGTGACGAGACGTGTGCATGCCCTGCACGGGAAGCTGGACGGGCTGGTGCCCATGTTCATCAACACCAACAGCGGCAGCTTCACCCACCTGGGCATGTTCACCCTGGGCGCCAGGGCCGACAGCTACTACGAGTACCTGCTGAAGCAGTGGATCCAGGGCGGGAAGAAGGAGCGGCA
Seq C2 exon
GCTGCTGGAAGACTACCTGGAAGCCGTGGACGGGATCAGGAAGCACCTGCTCGCCAGGTCTGAGCCCAGGAAGCTGACCTTCGTGGGGGAGCTCAACCACGGCCGCTTCAGCGCCAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046775-'13-24,'13-21,15-24=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0153215=Glyco_hydro_47=FE(14.1=100)
A:
PF0153215=Glyco_hydro_47=FE(14.3=100)
C2:
PF0153215=Glyco_hydro_47=FE(9.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTAATGCCTGCCTTCCGAA
R:
CACGAAGGTCAGCTTCCTGG
Band lengths:
258-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]