GgaEX6014643 @ galGal4
Exon Skipping
Gene
ENSGALG00000009079 | MAN1B1
Description
mannosidase, alpha, class 1B, member 1 [Source:HGNC Symbol;Acc:HGNC:6823]
Coordinates
chr17:337904-340626:-
Coord C1 exon
chr17:340438-340626
Coord A exon
chr17:339291-339481
Coord C2 exon
chr17:337904-338024
Length
191 bp
Sequences
Splice sites
3' ss Seq
TATACTGTTCTTTCTTTTAGAAA
3' ss Score
10.68
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
AAAGACATTGGGAACAGGCTCATGCCAGCATTCAAGACTCCTTCCAAAATTCCGTACTCTGACGTCAACATTGGCCGGGGCACCGCACACCCACCCCGCTGGACGTCTGACAGCACTGTGGCAGAGGTGACCAGTATACAGCTGGAGTTCAGAGAGCTCTCTCGTCTCACTGGGGATGAAAAATACCAG
Seq A exon
AAAGCTGTTGATGAGGTGATGAAACATGTTCACACCCTTTCAGGGAAAAATGATGGACTGGTGCCTATGTTCATAAACACCAACAGTGGGCAGTTCACTCACTTAGGTGTTTATACTCTGGGAGCCAGAGCTGACAGCTACTATGAGTATTTACTCAAGCAGTGGATTCAGGGTGGGAAAACAGAAAATGA
Seq C2 exon
ACTGTTGGAGGACTATATGAAAGCCATAGAAGGCGTGAAAAAGCATCTTCTTCAGAGATCACAACCCAAGAAGCTTACCTTTGTAGGAGAGCTTGCTCATGGCCATTTCAGTGCCAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009079-'21-21,'21-19,23-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.063 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0153215=Glyco_hydro_47=FE(14.1=100)
A:
PF0153215=Glyco_hydro_47=FE(14.3=100)
C2:
PF0153215=Glyco_hydro_47=FE(9.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTGACGTCAACATTGGCC
R:
TGAAATGGCCATGAGCAAGCT
Band lengths:
244-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]