DreEX0044466 @ danRer10
Exon Skipping
Gene
ENSDARG00000076592 | man1b1b
Description
mannosidase, alpha, class 1B, member 1b [Source:ZFIN;Acc:ZDB-GENE-070705-482]
Coordinates
chr5:28586262-28589276:-
Coord C1 exon
chr5:28589088-28589276
Coord A exon
chr5:28588801-28588991
Coord C2 exon
chr5:28586262-28586382
Length
191 bp
Sequences
Splice sites
3' ss Seq
TCTTTGGTTTCTGTCTGTAGCTG
3' ss Score
8.78
5' ss Seq
GGAGTGAGT
5' ss Score
6.05
Exon sequences
Seq C1 exon
AAAGAGATTGGCTTCAGACTGATGCCCGCCTTCAGCACTCCCTCCAAAATCCCCTATTCTGATGTGAATATTGGGAAGGGCACAGCTCATCCTCCGCGATGGACTTCAGACAGCACCGTAGCCGAGGTCACTAGCATTCAGCTGGAGTTCAGAGAGCTCAGCCGACTCACTGGAGACCCCAAATACAAG
Seq A exon
CTGGCTGTGATGGAGGTGATGAAGCAGGTGCACAAACTGGATGGAAAGCAAGATGGGCTTGTGCCGATGTTTATCAATACCAACAATGGACTGTTCACCCATCAGGGCATTTACACGCTAGGCGCCAGGGCTGACAGCTACTATGAGTATCTGCTTAAGCAGTGGATACAGGGAGGCAGAATCGAGCAGGA
Seq C2 exon
ATTGCTGGAGGACTATCTGCAGGCTGTGGAAGGAGTGAAGAAGAACCTGCTGAAGAAATCGACACCTCTTGGCCTTACATTTGTAGGAGAGTTGTCCCATGGACACTTCAGTCCCAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076592-'10-15,'10-14,11-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0153215=Glyco_hydro_47=FE(14.1=100)
A:
PF0153215=Glyco_hydro_47=FE(14.4=100)
C2:
PF0153215=Glyco_hydro_47=FE(9.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGACTGATGCCCGCCTTC
R:
TGTAAGGCCAAGAGGTGTCGA
Band lengths:
256-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]