MmuEX0027618 @ mm9
Exon Skipping
Gene
ENSMUSG00000036646 | Man1b1
Description
mannosidase, alpha, class 1B, member 1 [Source:MGI Symbol;Acc:MGI:2684954]
Coordinates
chr2:25200926-25204211:+
Coord C1 exon
chr2:25200926-25201114
Coord A exon
chr2:25203556-25203746
Coord C2 exon
chr2:25204091-25204211
Length
191 bp
Sequences
Splice sites
3' ss Seq
TTTCCCCTTGTCTGCCACAGGAG
3' ss Score
10.75
5' ss Seq
ACAGTGAGG
5' ss Score
3.44
Exon sequences
Seq C1 exon
GAAGATTTTGGAAAACGGCTGATGCCTGCCTTCACTACGCCCTCCAAGATCCCATACTCTGATGTGAACATTGGCACTGGATTTGCCCACTCACCCCAGTGGACTTCAGACAGCACGGTGGCAGAAGTGACGAGCATTCAGTTGGAGTTCCGGGAGCTCTCTCGTCTTACTGGAATAAAGAAATTCCAG
Seq A exon
GAGGCCGTGGAGGAAGTGACAAAGCACATCCACTCCCTGTCTGGGAAGAAAGACGGGCTGGTGCCTATGTTCATCAACACGAACAGCGGCCTCTTCACCCACCCAGGAGTGTTCACCTTGGGGGCCAGGGCTGACAGCTACTACGAATACCTGCTGAAACAGTGGATCCAGGGTGGCAAGAAGGAGACACA
Seq C2 exon
GTTGCTGGAAGACTATGTTAAAGCCATTGAGGGGATAAAAGCCCATCTGCTCCGGCAGTCTCAGCCCAGAAAGCTCACCTTCGTGGGAGAACTTGCCCACGGCCGCTTCAGTGCCAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036646_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0153215=Glyco_hydro_47=FE(14.1=100)
A:
PF0153215=Glyco_hydro_47=FE(14.3=100)
C2:
PF0153215=Glyco_hydro_47=FE(9.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATGCCTGCCTTCACTACG
R:
GTGAGCTTTCTGGGCTGAGAC
Band lengths:
249-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: