BtaEX6047582 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000048054 | UAP1L1
Description
UDP-N-acetylglucosamine pyrophosphorylase 1 like 1 [Source:HGNC Symbol;Acc:HGNC:28082]
Coordinates
chr11:106158201-106159660:-
Coord C1 exon
chr11:106159467-106159660
Coord A exon
chr11:106158925-106159065
Coord C2 exon
chr11:106158201-106158386
Length
141 bp
Sequences
Splice sites
3' ss Seq
TGTTGGCCTCGCATCCCCAGGGA
3' ss Score
8.75
5' ss Seq
CAAGTCAGT
5' ss Score
2.74
Exon sequences
Seq C1 exon
GTGGTGGAGAAGGCGTACCCTGAGGAGCCAGTGGGCGTGGTGTGCCAGGTGGACGGCGTCCCCCAGGTGGTGGAGTACAGCGAGATCAGCCCCGAGGTGGCGCAGCTGCGCGCGCCAGGTGGGGGCCTGCTGTACAACGCAGGCAACATCTGCAACCACTTCTTCACCCGAGACTTCCTCCGGACGGTCACCAG
Seq A exon
GGAGCTCGAGCCCCTGCTGCAGCCACACGTGGCTGTGAAGAAGGTCCCCTGTGTGGATGAGCACGGGAACCCAGTAAAGCCGCTGCAGCCGAACGGGATCAAGATGGAGAAGTTCGTGTTTGACGTGCTCCCGTTTGCCAA
Seq C2 exon
GAACTTCATGGCCTTCCAAGTGCTGCGGGAGGAGGAGTTCTCCCCACTCAAGAACGCTGACTCAGCCGACAGGGACAACCCCTCCACGTCCCGGCGGGCCCTGCTTGCCCAGCACTGCCGGTGGGCCCTGCGGGCAGGCGCCCGCTTCCTGGACGTGCACGGGGCCCAGCTCCCCGAGCAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000048054-'6-7,'6-6,9-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.021 C2=0.286
Domain overlap (PFAM):
C1:
PF0170413=UDPGP=FE(17.1=100)
A:
PF0170413=UDPGP=FE(12.5=100)
C2:
PF0170413=UDPGP=FE(16.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAGGCGTACCCTGAGGAG
R:
GAGTCAGCGTTCTTGAGTGGG
Band lengths:
251-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]