HsaEX6064193 @ hg38
Exon Skipping
Gene
ENSG00000197355 | UAP1L1
Description
UDP-N-acetylglucosamine pyrophosphorylase 1 like 1 [Source:HGNC Symbol;Acc:HGNC:28082]
Coordinates
chr9:137079256-137080874:+
Coord C1 exon
chr9:137079256-137079449
Coord A exon
chr9:137080002-137080142
Coord C2 exon
chr9:137080689-137080874
Length
141 bp
Sequences
Splice sites
3' ss Seq
TCTGCTCTCCCGTGCCCCAGGGA
3' ss Score
9.09
5' ss Seq
TAAGTTAGT
5' ss Score
0.88
Exon sequences
Seq C1 exon
GTGGTGGAAAAGGCATACCCCGAGGAGCCCGTGGGCGTGGTGTGCCAGGTGGACGGTGTCCCCCAGGTGGTGGAGTACAGCGAGATCAGTCCTGAGACCGCACAGCTACGTGCCTCCGACGGGAGCCTGCTGTACAATGCAGGCAACATCTGCAACCACTTCTTCACCCGAGGCTTCCTTAAGGCGGTCACCAG
Seq A exon
GGAGTTTGAGCCTTTGCTGAAGCCACACGTGGCTGTGAAGAAGGTCCCGTATGTGGATGAGGAGGGGAATCTGGTAAAGCCGCTAAAACCGAACGGGATAAAGATGGAGAAGTTTGTGTTTGATGTGTTCCGGTTTGCTAA
Seq C2 exon
GAACTTTGCTGCCTTGGAAGTGCTGCGGGAGGAGGAATTTTCCCCACTGAAGAACGCAGAGCCAGCCGACAGGGACAGTCCCCGCACCGCTCGCCAGGCCCTGCTCACCCAGCACTACCGGTGGGCTCTGCGGGCCGGGGCCCGCTTCCTGGATGCCCATGGGGCCTGGCTCCCAGAGCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197355-'8-9,'8-7,10-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.286
Domain overlap (PFAM):
C1:
PF0170413=UDPGP=FE(21.3=100)
A:
PF0170413=UDPGP=FE(15.6=100)
C2:
PF0170413=UDPGP=FE(20.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAAAAGGCATACCCCGAG
R:
CTGCGTTCTTCAGTGGGGAAA
Band lengths:
250-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains