GgaEX1061486 @ galGal3
Exon Skipping
Gene
ENSGALG00000009090 | UAP1L1
Description
NA
Coordinates
chr17:737293-740180:-
Coord C1 exon
chr17:739984-740180
Coord A exon
chr17:738897-739037
Coord C2 exon
chr17:737293-737478
Length
141 bp
Sequences
Splice sites
3' ss Seq
GTTTGTCCTCCTTTTTGCAGAAA
3' ss Score
11.04
5' ss Seq
TAAGTTAGT
5' ss Score
0.88
Exon sequences
Seq C1 exon
GTGGTGGAGAAGGCCTACCCCACAGAGCCTATTGGGGTGGTGTGCCGTGTGGATGGGGTCTCTCATGTGGTGGTGGAGTACAGTGAGATCAGCCCAGAGACTGCGCAGCAGCGAAGACCTGATGGGGGGCTGATGTACAGCGTTGGCAATATCTGCAACCATTTCTTCACTGTTGAGTTTCTGCAGACAGTGGCCCA
Seq A exon
AAAACACGAGTCCCAGCTGAAGCACCACGTGGCCATAAAGAAGGTGCCTTACATTGATGAGGAGGGAAATCTGGTAAAACCACTAAAACCGAATGGAATAAAGCTGGAGAAGTTTGTGTTTGATGTGTTCCAGTTCTCTAA
Seq C2 exon
GAATTTTGTGGCATTTGAAGTTTTGAGAGAAGAGGAATTCTCGCCATTGAAAAATGCAGACACAGCTGAGACAGACAACCCTACCACTGCTCGGCAGTCCCTCCTGGCCCAGCACTACCGCTGGGCTCTCAAGGCTGGGGCCAGATTTCTGGATGAAGATGGCTGCAGGATACCAGAGAAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009090-'5-5,'5-4,7-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.238
Domain overlap (PFAM):
C1:
PF0170413=UDPGP=FE(16.4=100)
A:
PF0170413=UDPGP=FE(11.9=100)
C2:
PF0170413=UDPGP=FE(15.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCCCACAGAGCCTATTGGG
R:
GTCTGTCTCAGCTGTGTCTGC
Band lengths:
258-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]