GgaEX1061486 @ galGal4
Exon Skipping
Gene
ENSGALG00000009090 | UAP1L1
Description
UDP-N-acetylglucosamine pyrophosphorylase 1 like 1 [Source:HGNC Symbol;Acc:HGNC:28082]
Coordinates
chr17:357468-364688:-
Coord C1 exon
chr17:364484-364688
Coord A exon
chr17:359072-359212
Coord C2 exon
chr17:357468-357653
Length
141 bp
Sequences
Splice sites
3' ss Seq
GTTTGTCCTCCTTTTTGCAGAAA
3' ss Score
11.04
5' ss Seq
TAAGTTAGT
5' ss Score
0.88
Exon sequences
Seq C1 exon
GTTTGCACCAGATCTCACAGAACAAAGTGGCAGTGCTGCTGCTGGCTGGAGGACAAGGAACCCGCCTGGGAGTGAGCTACCCCAAGGGCATGTACAATGTGGGACTGCCCAGTGGCAAAACCTTGTATCAGATCCAAGCAGAAAGGATCCGCAAAGTGGAGCAGCTCGCTGGCCAGAGGCACCACTGCAAGTGTACCATCCCCTG
Seq A exon
AAAACACGAGTCCCAGCTGAAGCACCACGTGGCCATAAAGAAGGTGCCTTACATTGATGAGGAGGGAAATCTGGTAAAACCACTAAAACCGAATGGAATAAAGCTGGAGAAGTTTGTGTTTGATGTGTTCCAGTTCTCTAA
Seq C2 exon
GAATTTTGTGGCATTTGAAGTTTTGAGAGAAGAGGAATTCTCGCCATTGAAAAATGCAGACACAGCTGAGACAGACAACCCTACCACTGCTCGGCAGTCCCTCCTGGCCCAGCACTACCGCTGGGCTCTCAAGGCTGGGGCCAGATTTCTGGATGAAGATGGCTGCAGGATACCAGAGAAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009090_MULTIEX1-4/4=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.238
Domain overlap (PFAM):
C1:
PF0170413=UDPGP=FE(17.2=100)
A:
PF0170413=UDPGP=FE(11.9=100)
C2:
PF0170413=UDPGP=FE(15.7=100)
Main Skipping Isoform:
ENSGALT00000034191fB13372
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGCAGAAAGGATCCGCAA
R:
TTCTCTGGTATCCTGCAGCCA
Band lengths:
252-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]