RnoEX0095570 @ rn6
Exon Skipping
Gene
ENSRNOG00000012960 | Uap1l1
Description
UDP-N-acetylglucosamine pyrophosphorylase 1 like 1 [Source:RGD Symbol;Acc:1310630]
Coordinates
chr3:2581385-2582827:-
Coord C1 exon
chr3:2582634-2582827
Coord A exon
chr3:2582159-2582231
Coord C2 exon
chr3:2581385-2581570
Length
73 bp
Sequences
Splice sites
3' ss Seq
CTTTGTCCTCTTGCTGCCAGGGA
3' ss Score
8.19
5' ss Seq
CTGGTAAAG
5' ss Score
5.75
Exon sequences
Seq C1 exon
GTCGTGGAGAAAGCGTACCCAGAAGAGCCAGTGGGTGTGGTGTGCCAGGTGGACGGTGTCCCGCAGGTGGTTGAATACAGCGAGATCAGCCCTGAGATTGCTAGGCAGTGTGGGGCTGATGGTGGCTTGCTCTACAACGCAGGCAACATCTGCAACCATTTCTTTACCAGAGGCTTCCTGGATATGGTCATCAG
Seq A exon
GGAGTTTGAGCCCTTGCTGAAGCTGCATGTGGCTGTGAAGAAGGTTCCGTACGTGGATGAGGAGGGAAATCTG
Seq C2 exon
GAACTTTGTTGCCTTTGAAGTGTGTCGGGAGGAGGAGTTCTCCCCACTGAAGAATGCTGACACAGCCGACAGGGACAATCCCTCCACCTCCAGGCGAGCCTTACTAGTTCAGCACTACCGCTGGGCTCTCCAGGCTGGAGCCCACTTCCTGGATGTACACGGGGTCCAGCTTCCGGAGCAGTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012960-'7-13,'7-12,8-13
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.222
Domain overlap (PFAM):
C1:
PF0170413=UDPGP=FE(16.8=100)
A:
PF0170413=UDPGP=FE(12.3=100)
C2:
PF0170413=UDPGP=PD(15.7=95.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGTGGTTGAATACAGCGA
R:
GAGAACTCCTCCTCCCGACAC
Band lengths:
174-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]