BtaEX6047679 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021550 | MAMDC4
Description
Bos taurus MAM domain containing 4 (MAMDC4), mRNA. [Source:RefSeq mRNA;Acc:NM_001143873]
Coordinates
chr11:106326951-106327526:-
Coord C1 exon
chr11:106327408-106327526
Coord A exon
chr11:106327237-106327327
Coord C2 exon
chr11:106326951-106327097
Length
91 bp
Sequences
Splice sites
3' ss Seq
CTTTGCCCGGTGCCCCCCAGGTG
3' ss Score
9.11
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
GCACCCTGAGGGTCCACGTGGAGGAGGCCGGCAGGCAGCAAGTACTCAGCGTCAGCTCCCGCGGAGGGGCCGCCTGGCGCCTGGGCAGCGTGGACCTGCAGGCCGGGCAGGCCTGGAGG
Seq A exon
GTGGTGTTCGAGGCAGTGGCCGCCGGCGTGGAGCACTCCTACGTGGCACTGGACGACCTGCTCCTCCAGGATGGGCCCTGCCCCCTGCCAG
Seq C2 exon
CTTCCTGTGACTTCGAGGCTGGTCTTTGTGGCTGGAACCATGTGCCCCGGCCCGGCCTGGGCGGGTACAGCTGGGACTGGAGCAGCGGAGCCTCGCCCTCCCGCTACCCGCAGCCCCCCGTGGACCACACCCTGGGCACAGAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021550-'24-22,'24-21,25-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.180
Domain overlap (PFAM):
C1:
PF0062918=MAM=FE(25.5=100)
A:
PF0062918=MAM=PD(18.3=90.3)
C2:
PF0062918=MAM=PU(28.3=94.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAAGTACTCAGCGTCAGC
R:
CTGCTCCAGTCCCAGCTGTA
Band lengths:
169-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]