GgaEX6014710 @ galGal3
Exon Skipping
Gene
ENSGALG00000008995 | MAMDC4
Description
NA
Coordinates
chr17:938545-939139:-
Coord C1 exon
chr17:939018-939139
Coord A exon
chr17:938810-938900
Coord C2 exon
chr17:938545-938691
Length
91 bp
Sequences
Splice sites
3' ss Seq
TGAGCGTGCCCTCCCTGCAGGTG
3' ss Score
11.74
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
GGACTCTCAGCATCCTTGTGGAGGAGAATGGTGAGCAGAGGAAGCTGTTCAGCATCAGCGCAATGGAGGGTGATACCTGGCACCGCGGGCACGTCACTGTTCGGGCAGACACAGACTGGAAG
Seq A exon
GTGGTGTTTGAGGCGGTGGGAGCTGGGAGTGAGCGCAGCTACATGGCACTGGATGACCTGCGTGTGTCAGATGGAGCCTGCCCTGAGCCAG
Seq C2 exon
CATCCTGTGACTTTGAGTGGGACACGTGCGGCTGGAGCAGCCCCTCAGATGAGCGCCTGCACGGCTTCACCTGGGGCTGGAAGAGTGGTGTCCCCCTGGCCAAGTACCCCGGCCCTGAACAGGACCACACCCTGGGCACAGAGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008995-'28-32,'28-30,30-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.005 A=0.000 C2=0.260
Domain overlap (PFAM):
C1:
PF0062918=MAM=FE(25.8=100)
A:
PF0062918=MAM=PD(18.1=90.3)
C2:
PF0062918=MAM=PU(28.3=94.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGGAAGCTGTTCAGCAT
R:
CTCTTCCAGCCCCAGGTGAAG
Band lengths:
173-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]