MmuEX6099586 @ mm10
Exon Skipping
Gene
ENSMUSG00000026941 | Mamdc4
Description
MAM domain containing 4 [Source:MGI Symbol;Acc:MGI:2685841]
Coordinates
chr2:25564825-25565398:-
Coord C1 exon
chr2:25565280-25565398
Coord A exon
chr2:25565096-25565186
Coord C2 exon
chr2:25564825-25564971
Length
91 bp
Sequences
Splice sites
3' ss Seq
TGTGGCTCTGTATCCTATAGGTG
3' ss Score
10.94
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GCACCTTGAGGGTCCACGTGGAAGAGAGCACAAGGCGTCAAGAGCTCAGCATCAGTGCCCATGGTAGATCTGCCTGGCGCCTGGGCAGCGTCAATGTGCAGGCTGAGCAAGCCTGGAAG
Seq A exon
GTGGTGTTTGAGGCTGTGGCTGCTGGTGTAGAATATTCCTACATGGCTCTAGATGACATTTCCCTCCAAGATGGGCCCTGTCCTCAGCCAG
Seq C2 exon
GTTCCTGTGACTTTGAAACTGGCCTGTGTGGGTGGAGCCACCTGCCCTGGCCCAGCCTGGGCGGGTACAGCTGGGACTGGAGTAGTGGAGCCACCCCATCCCGCTACCCCCAGCCTTCAGTGGACCATACCCTGGGCACAGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026941-'36-35,'36-33,37-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.174 A=0.000 C2=0.080
Domain overlap (PFAM):
C1:
PF0062918=MAM=FE(24.8=100)
A:
PF0062918=MAM=PD(17.8=90.3)
C2:
PF0062918=MAM=PU(28.3=94.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAAGGCGTCAAGAGCTCAG
R:
CACTACTCCAGTCCCAGCTGT
Band lengths:
178-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types