BtaEX6047701 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013889 | TMEM141
Description
Bos taurus transmembrane protein 141 (TMEM141), mRNA. [Source:RefSeq mRNA;Acc:NM_001034462]
Coordinates
chr11:106375058-106376205:-
Coord C1 exon
chr11:106376122-106376205
Coord A exon
chr11:106375876-106375983
Coord C2 exon
chr11:106375058-106375475
Length
108 bp
Sequences
Splice sites
3' ss Seq
CCCTGCCCCCTGCTCCCCAGTCG
3' ss Score
7.31
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GCACCGGTGCAACCTTCGGCCTGCAGATGCTGGTTCAAAGGAAGCTTCCATACCCCTTTCAGTGGAAGGTGCTGCTGGCTGTGG
Seq A exon
TCGCAGGCTCAGTGGCCAGCTACTGGGTGACCCGAGTGGAGTCGCAGAAATGCAGCAACCTCTGGCTCTTCCTGGAGACAGGGCAGCTCCCCAAAGACATGGGCACAG
Seq C2 exon
ATCGGCGCAGCTAGGAGAGCTCCAGCCAGGGCACAGAAGACCTGGGGCCAGACAATTCTAGAACACAGCCCTCGGCACCTCTGCACCCCAGGTTGGCCCTCCCCACACCCGTGGCCCCCGCACACAGGCATGACCAGGTCTGTTGAACCTGTGCAGACTGCTCCTGCCCAGCCTGGCTGCCCAGGAGCTCAAGCCAGGAGACTCCGTTTCTGCGATGGCTGTCCTGCAGGTGGACACAGCGCTGGAGAGGACCAGCATGCCTCATGCACCTTTGGGGACAGCCCTGGAGCAGGGAGGGGGCTTCTGCACTCCGCTGCTGACACTCCCTTTCTGGCCCCTGCATCCCCCACCCACCCCAGTCACAGATGACAGTTCCCCTGGGGGCTGCGGAACTAATAAACACCTTGTCCTATTTCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013889-'5-7,'5-5,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.081 C2=1.000
Domain overlap (PFAM):
C1:
PF151101=TMEM141=FE(29.2=100),PF140121=DUF4229=FE(63.6=100)
A:
PF151101=TMEM141=PD(29.2=75.7),PF140121=DUF4229=PD(27.3=32.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCAGTGGAAGGTGCTGCTG
R:
CATCGCAGAAACGGAGTCTCC
Band lengths:
245-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]