HsaEX6064080 @ hg19
Exon Skipping
Gene
ENSG00000244187 | TMEM141
Description
transmembrane protein 141 [Source:HGNC Symbol;Acc:28211]
Coordinates
chr9:139686399-139687709:+
Coord C1 exon
chr9:139686399-139686482
Coord A exon
chr9:139686703-139686810
Coord C2 exon
chr9:139687271-139687709
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTCCATTTCCTGCTCCACAGTTG
3' ss Score
8.38
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GCACCGGCATGGCCTTTGGCTTGCAGATGTTCATTCAGAGGAAGTTTCCATACCCTTTGCAGTGGAGCCTCCTAGTGGCCGTGG
Seq A exon
TTGCAGGCTCTGTGGTCAGCTACGGGGTGACGAGAGTGGAGTCGGAGAAATGCAACAACCTCTGGCTCTTCCTGGAGACCGGGCAGCTCCCCAAAGACAGGAGCACAG
Seq C2 exon
ATCAGAGAAGCTAGGAGAGCTCCAGCAGGGGCACAGAGGATTGGGGGCAGGAGGAGTCTGGAACACAGCCTTCATGCCCCCTGACCCCAGGCCGACCCTCCCCACACCCTAGGGTACCCCAGTCGTATCCTCTGTCCGCATGTGTGGCCAGGCCTGACAAACACCTGCAGATGGCTGCTGCCCCAACCTGGGACCTGCCCAGGAGGTTGGAGCAGAAAGGGCTCTCCCTGGGGTGGTGTTTCTCCTCTAGGGTATTGGGATGCATGTTCTGCACTGCCAGCAGAGAGGGTGTGTCTGGGGGCCACCACCTATGGGACACGGGGTCGAAGGGGCCTGTACACTCTGTCATTTCCTTTCTAGCCCCTGCATCTCCAACAAGTCCAAGGTGACAGCTGGTGCTAGGGGCGTGGGGTTAATAAATGGCTTATCCTTCTCTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000244187-'3-6,'3-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.081 C2=1.000
Domain overlap (PFAM):
C1:
PF151101=TMEM141=FE(29.2=100),PF140121=DUF4229=FE(59.6=100)
A:
PF151101=TMEM141=PD(29.2=75.7),PF140121=DUF4229=PD(23.4=29.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTTGGCTTGCAGATGTTC
R:
ATCTGCAGGTGTTTGTCAGGC
Band lengths:
245-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)