DreEX6013446 @ danRer10
Exon Skipping
Gene
ENSDARG00000101963 | tmem141
Description
transmembrane protein 141 [Source:ZFIN;Acc:ZDB-GENE-060929-272]
Coordinates
chr5:53657901-53661630:-
Coord C1 exon
chr5:53661547-53661630
Coord A exon
chr5:53658564-53658671
Coord C2 exon
chr5:53657901-53658151
Length
108 bp
Sequences
Splice sites
3' ss Seq
CGCTTTGTTTTTCTTTGCAGTTT
3' ss Score
10.85
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GCACAGTGGGTATATTTTTTGGACAGAGAGCACTTCAGAAAATAATCAAATATCCCCTTCAGTGGAACCTTTTTGTATCTATTG
Seq A exon
TTTCTTCCTCTGTATTCAGCTATTCGGTAACTCGCTGGGAAACCATGAAGTGTTCCGATGTCTGGTTATTTCTTGAGACAGGAAATATTCCTGACAGAAACTCTGACA
Seq C2 exon
AGGAAGAACCAGAAACTTCTGCTGATTCTACAACCACACAACATGAGGATGTGCTGGAATAAAGACCTTTGTGCCATAGTCTGAGTGGCAGATAAGATACTGTTACTTTAATAAATCAGGGAGTTGAATGACATGATTTCAGTAATAAGTTTAGCCTTTCAAATCAAATTGTGTGTGTGTCAGTGAATAATTCACATATATAGGATGTATTATTACTTATCTGGGTTGCACAATAAAATATGTTTATAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101963-'3-3,'3-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=67%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.135 C2=1.000
Domain overlap (PFAM):
C1:
PF151101=TMEM141=FE(29.2=100)
A:
PF151101=TMEM141=PD(29.2=75.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACAGAGAGCACTTCAGAA
R:
TCACTGACACACACACAATTTGA
Band lengths:
251-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]