MmuEX0047742 @ mm9
Exon Skipping
Gene
ENSMUSG00000026939 | Tmem141
Description
transmembrane protein 141 [Source:MGI Symbol;Acc:MGI:1098773]
Coordinates
chr2:25475587-25476978:-
Coord C1 exon
chr2:25476895-25476978
Coord A exon
chr2:25476586-25476693
Coord C2 exon
chr2:25475587-25476050
Length
108 bp
Sequences
Splice sites
3' ss Seq
TCCTGCTTCCTGTTCTCCAGTTG
3' ss Score
8.19
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GCACTGGTGCGACTTTTGGCCTGCTGATGTTCATTAAGAGGAAGTTTCCATACCCTGTGCAGTGGAGCTTCCTAGTGTCTGCCA
Seq A exon
TTGCAGGATCTGTGGCCAGCTACAGAGTGACAAGTATGGAGTGTCAGAAATGCAGCAATCTCTGGCTCTTCCTGGAGACCGGGCAGCTCCCCAAAGACATAAGCACAG
Seq C2 exon
ATCCTCACGACTAGAAGCGCTCTGGCTGCTGAGGTGCAGGATGCGAAGCAGGGAAGATCCTAGAGCACAGATCTAACGTCATCTAACTCCAGGACAGTCCCTCCTACCTCAGCAAACACACACACACACATGCATCCTCTAGTGTCATCTCTCTCCTACACATGCATGTGGGGTCCTGCCTGAAAAACCTGTGAAGACTACTGCTGCACCAAATCCAGGACCTGCCAGCTCGGAACAAGGCTTGGGAGGGGGAGATCTTCCGCAGAGCAGCAAGGAGCCTCAGAGAGGCTTGAATCCTGTTGCACCCAGCTGCTGGAGCAGCAGCCTGCATGTGTTGAGAGAGACTTGAGTGCTTTCTCTGATCTCTGCCCCAAATCCAAGGAGAATGTTGGAGAGTTGTAGCTAATAAATGGCTTGTCCTTTTTCCTATGTGAGCTCTGAAGCAATTAAACACGTGCTAGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026939-'3-9,'3-7,5-9
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.075 C2=1.000
Domain overlap (PFAM):
C1:
PF151101=TMEM141=FE(29.8=100)
A:
PF151101=TMEM141=PD(29.2=75.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGTGGAGCTTCCTAGTGT
R:
CAGGTCCTGGATTTGGTGCAG
Band lengths:
251-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: