GgaEX0013299 @ galGal3
Exon Skipping
Gene
ENSGALG00000009054 | TMEM141
Description
NA
Coordinates
chr17:795476-796710:-
Coord C1 exon
chr17:796627-796710
Coord A exon
chr17:796275-796406
Coord C2 exon
chr17:795476-795690
Length
132 bp
Sequences
Splice sites
3' ss Seq
CCGCGTGCTGGTCTGTCCAGCGG
3' ss Score
4.93
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GCAGCGGCGCTGCGTTTGCCGTGCAGAAGCTGGTGAACAGGAGGCTGCCGTACGCGCTGCAGTGGAACCTGCTGCTGTCTGTGG
Seq A exon
CGGCAGGGTCCTTGGCCAGCTACACGGTGACCAGAGCGGAGACGCAGAAGTGCTCGGACTTCTGGATTTATTTGGAGACGGGCATGTCCCCGCGGGAGCGCAGTGTGGCTGACGGAGTGCCTCAGCCCGCAG
Seq C2 exon
ACAATCTGCTCAGCCCAGAGGACGCAGAGAGTGTGTCACCGCCCGTGAGGAGGAACAAATATGGGGACGTCGTGGAGTAGCCAGGAGCACGGCGTGCTGTGCCCACATTCTGCTGCTGCTGCCCTCAGCCCTTCTGTCTGCTTGGCGTGCCCCTGCAGTGTGGGAGACTTCTGCAGTGCTGCCGGGGAGCTCAGAGGAGTCCCCAGTGGTTGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009054_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.453 A=0.289 C2=0.808
Domain overlap (PFAM):
C1:
PF151101=TMEM141=PU(57.4=45.3)
A:
PF151101=TMEM141=PD(41.2=62.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGCAGAAGCTGGTGAACA
R:
ACTGCAGAAGTCTCCCACACT
Band lengths:
242-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]