BtaEX6047723 @ bosTau6

Exon Skipping

Gene

ENSBTAG00000038584 | OLFM1

Description

Bos taurus olfactomedin 1 (OLFM1), mRNA. [Source:RefSeq mRNA;Acc:NM_001101879]

Coordinates

chr11:106691746-106698605:-

Coord C1 exon

chr11:106698456-106698605

Coord A exon

chr11:106693634-106693789

Coord C2 exon

chr11:106691746-106692074

Length

156 bp

Sequences

Splice sites

3' ss Seq

GCTTGTTGCCTTTTTGACAGGTG

3' ss Score

7.8

5' ss Seq

AAGGTACGT

5' ss Score

10.75

Exon sequences

Seq C1 exon

GTGCTGCCCACCAACCCTGAGGAGAGCTGGCAGGTGTACAGCTCTGCCCAGGACAGTGAGGGCAGGTGTATCTGCACAGTGGTCGCCCCCCAGCAGACCATGTGTTCACGGGATGCCCGCACGAAACAGCTGAGGCAGCTACTGGAGAAG

Seq A exon

GTGCAGAACATGTCGCAGTCCATAGAGGTCCTGGACCGGCGGACCCAGAGGGACTTGCAGTACGTGGAGAAGATGGAGAACCAGATGAAAGGGCTGGAGTCCAAGTTCAGACAGGTGGAGGAGAGCCACAAGCAGCACCTGGCCAGGCAGTTCAAG

Seq C2 exon

GGCTAACTTAAAAGAGTTTTTTCAATGCTGCAGACTGAAGAAGCAGTCCACTCCCATGTAACCATGACAGAGGGCCAGAGAGCTTTTTTGCACCCTGCATTTTTACTATTATTTCCCGTTACTTAGCACCATGCCCCTAAGGAACCTTGAACACAACCAGGATCTCTTTTGCATGTGACTGTAGATGCATTTCATGAATAGTTTGAACCCTTGTCAATGCATTTTTTGAAAAAACAAAAACAAACAAAAAAAGAGATACTTTGTGTATGTGACTCAAAGCATGTAACCTTAAGATGTTGCATTCTAAACTGACAATAAAGACCTTTCCC

VastDB Features

Vast-tools module Information

Secondary ID

ENSBTAG00000038584-'3-4,'3-2,5-4=AN

Average complexity

A_C2

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.170 A=0.202 C2=1.000

Domain overlap (PFAM):

C1:

PF0081212=Ephrin=FE(45.4=100),PF123083=Noelin-1=PU(46.5=94.0),PF149421=Muted=PU(43.5=80.0),PF130121=MitMem_reg=PU(31.2=48.0),PF100464=BLOC1_2=PU(29.6=42.0)

A:

PF0081212=Ephrin=PD(46.3=96.2),PF123083=Noelin-1=FE(50.5=100),PF149421=Muted=PD(54.3=96.2),PF130121=MitMem_reg=FE(66.2=100),PF100464=BLOC1_2=PD(67.6=92.3)

C2:

PF123083=Noelin-1=PD(0.1=0.0)

Main Inclusion Isoform:

ENSBTAP00000048556