GgaEX1041246 @ galGal4

Exon Skipping

Gene

ENSGALG00000002515 | OLFM1

Description

Noelin [Source:UniProtKB/Swiss-Prot;Acc:Q9IAK4]

Coordinates

chr17:7611513-7619084:+

Coord C1 exon

chr17:7611513-7611662

Coord A exon

chr17:7616481-7616636

Coord C2 exon

chr17:7618865-7619084

Length

156 bp

Sequences

Splice sites

3' ss Seq

CATCCCTTCTCGTTTGGCAGGTG

3' ss Score

10.61

5' ss Seq

AAGGTAGGT

5' ss Score

10.29

Exon sequences

Seq C1 exon

GTGTTGCCTACCAACCCAGAGGAAAGCTGGCAGGTCTACAGCTCTGCCCAGGATAGCGAGGGACGTTGTATATGCACAGTGGTGGCACCTCAACAGACGATGTGCTCGCGTGATGCCAGGACAAAGCAGCTGAGACAACTATTAGAAAAG

Seq A exon

GTGCAAAACATGTCTCAGTCAATAGAGGTGTTGGACAGGCGGACCCAGCGAGACCTACAGTACGTGGAGAAGATGGAAAACCAGATGAGAGGACTGGAATCCAAATTTAAGCAAGTGGAAGAAAGCCACAAGCAGCACCTGGCGAGGCAGTTTAAG

Seq C2 exon

GCAATAAAAGCGAAAATGGAGGAACTTAGGCCTTTGATACCAGTGTTGGAAGAGTACAAAGCCGATGCCAAATTGGTATTGCAGTTTAAAGAGGAGGTCCAGAATCTGACGTCAGTTCTAAACGAACTCCAGGAAGAGATTGGCGCCTATGACTACGAAGAGCTTCAGAACAGAGTGTCAAATCTTGAAGAAAGGCTTCGTGCATGCATGCAAAAATTAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSGALG00000002515_MULTIEX1-1/2=C1-2

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.240 A=0.192 C2=0.000

Domain overlap (PFAM):

C1:

PF123083=Noelin-1=PU(46.5=94.0),PF0154011=Lipoprotein_7=PU(18.1=56.0),PF101864=Atg14=PU(15.5=54.0),PF045827=Reo_sigmaC=PU(14.5=46.0),PF131661=AAA_13=PU(9.7=30.0)

A:

PF123083=Noelin-1=FE(50.5=100),PF0154011=Lipoprotein_7=FE(32.9=100),PF101864=Atg14=FE(29.3=100),PF045827=Reo_sigmaC=FE(32.1=100),PF131661=AAA_13=FE(32.9=100),PF045137=Baculo_PEP_C=PU(38.9=98.1),PF138741=Nup54=PU(39.5=94.2)

C2:

PF123083=Noelin-1=PD(0.1=0.0),PF0154011=Lipoprotein_7=FE(47.1=100),PF101864=Atg14=FE(42.0=100),PF045827=Reo_sigmaC=FE(45.9=100),PF131661=AAA_13=FE(47.1=100),PF045137=Baculo_PEP_C=FE(55.7=100),PF138741=Nup54=FE(58.9=100),PF045087=Pox_A_type_inc=WD(100=28.4)

Main Inclusion Isoform:

ENSGALP00000003955