DreEX6014212 @ danRer10

Exon Skipping

Gene

ENSDARG00000018270 | olfm1a

Description

olfactomedin 1a [Source:ZFIN;Acc:ZDB-GENE-040718-194]

Coordinates

chr5:64065842-64078217:+

Coord C1 exon

chr5:64065842-64065991

Coord A exon

chr5:64071393-64071548

Coord C2 exon

chr5:64077998-64078217

Length

156 bp

Sequences

Splice sites

3' ss Seq

TCTTTCTCTCTGTCTCTAAGGTC

3' ss Score

10.12

5' ss Seq

AAGGTGCGT

5' ss Score

9.49

Exon sequences

Seq C1 exon

GTGCTGCCTGCGAACCCTGAGGAGTCGTGGCAGGTGTACAGCTCAGCGCAGGACAGCGAGGGCAGGTGTGTGTGCACGGTTGTGGCTCCTCAGCAGACCATGTGCTCACGGGACGCCAGGACCAAGCAACTGAGACAGCTTCTGGAAAAA

Seq A exon

GTCCAGAATATGACTCAGTCCATCCAGAATCTTGACCAGAGGACTCAGAAAGACCTGCAGTATGTGCAAAGAATGGAGGTGCAGCTCAGAGGACTGGAAACCAAGTTCAAACAGGTGGAAGAAAGCCACAAGCAGAATATCGCCAAGCAATATAAG

Seq C2 exon

GCCATAAAAGCGAAAATGGAGGAACTTAGGCCAATGATACCAGTGTTGGAGGAATACAAGGCCGATGCAAAATTGGTAATGCAGTTTAAAGAGGAGGTCAAGAATCTGACGTCAGTGCTAAGTGAGCTGCAGGAGGAGATCGGGGCCTTTGACTACGAGGAGCTCCACAACAGGGTGTCTAATCTTGAGGAGAGGCTTCGTGCGTGCATGCAAAAATTAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSDARG00000018270-'8-6,'8-4,11-6=AN

Average complexity

A_C2

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.183 A=0.159 C2=0.000

Domain overlap (PFAM):

C1:

PF123083=Noelin-1=PU(46.5=94.0),PF041569=IncA=PU(18.6=58.0),PF101864=Atg14=PU(14.7=56.0),PF045827=Reo_sigmaC=PU(17.2=54.0),PF060097=Laminin_II=PU(23.2=52.0)

A:

PF123083=Noelin-1=FE(50.5=100),PF041569=IncA=FE(32.7=100),PF101864=Atg14=FE(26.8=100),PF045827=Reo_sigmaC=FE(32.5=100),PF060097=Laminin_II=FE(45.5=100),PF138741=Nup54=PU(41.9=94.2)

C2:

PF123083=Noelin-1=PD(0.1=0.0),PF041569=IncA=FE(46.8=100),PF101864=Atg14=FE(38.4=100),PF045827=Reo_sigmaC=FE(46.5=100),PF060097=Laminin_II=PD(28.6=43.2),PF138741=Nup54=PD(56.4=89.2)

Main Inclusion Isoform:

ENSDARP00000008954