RnoEX0062230 @ rn6

Exon Skipping

Gene

ENSRNOG00000009862 | Olfm1

Description

olfactomedin 1 [Source:RGD Symbol;Acc:620320]

Coordinates

chr3:6776207-6783084:+

Coord C1 exon

chr3:6776207-6776356

Coord A exon

chr3:6780814-6780969

Coord C2 exon

chr3:6782865-6783084

Length

156 bp

Sequences

Splice sites

3' ss Seq

ACCTGTTACCCTCTTGACAGGTG

3' ss Score

10.75

5' ss Seq

AAGGTACGC

5' ss Score

10.4

Exon sequences

Seq C1 exon

GTGTTGCCCACCAACCCCGAGGAGAGCTGGCAGGTGTACAGCTCTGCCCAGGACAGTGAGGGCAGGTGTATCTGCACGGTGGTCGCCCCCCAGCAGACCATGTGTTCACGGGATGCCCGCACAAAACAGCTGAGGCAGCTACTGGAGAAG

Seq A exon

GTGCAAAACATGTCTCAATCCATAGAAGTCTTGGACAGGCGGACTCAGAGAGACCTGCAGTACGTGGAGAAGATGGAGAACCAGATGAAAGGCCTGGAGTCCAAGTTCAGGCAGGTGGAGGAGAGCCATAAGCAGCATCTGGCCAGGCAGTTCAAG

Seq C2 exon

GCAATAAAAGCGAAAATGGATGAACTTAGGCCTTTGATTCCTGTGTTGGAAGAGTACAAGGCCGATGCCAAATTGGTATTGCAGTTTAAGGAGGAGGTCCAGAATCTGACGTCAGTGCTTAACGAACTGCAAGAGGAAATTGGCGCCTATGACTACGATGAACTTCAGAGCAGAGTGTCCAATCTTGAAGAAAGGCTCCGTGCATGCATGCAAAAACTAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSRNOG00000009862-'9-11,'9-4,21-11

Average complexity

C2

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.270 A=0.356 C2=0.000

Domain overlap (PFAM):

C1:

PF123083=Noelin-1=PU(46.5=94.0),PF101864=Atg14=PU(15.4=54.0),PF0154011=Lipoprotein_7=PU(17.7=52.0)

A:

PF123083=Noelin-1=FE(50.5=100),PF101864=Atg14=FE(29.1=100),PF0154011=Lipoprotein_7=FE(34.7=100),PF138741=Nup54=PU(41.5=94.2)

C2:

PF123083=Noelin-1=PD(0.1=0.0),PF101864=Atg14=FE(41.7=100),PF0154011=Lipoprotein_7=PD(45.6=90.5),PF138741=Nup54=PD(56.8=90.5),PF045087=Pox_A_type_inc=WD(100=28.4)

Main Inclusion Isoform:

ENSRNOP00000013443