DreEX6083104 @ danRer10
Exon Skipping
Gene
ENSDARG00000014053 | olfm1b
Description
olfactomedin 1b [Source:ZFIN;Acc:ZDB-GENE-040801-228]
Coordinates
chr21:6859802-6867902:+
Coord C1 exon
chr21:6859802-6859951
Coord A exon
chr21:6862655-6862810
Coord C2 exon
chr21:6867683-6867902
Length
156 bp
Sequences
Splice sites
3' ss Seq
CCTTCTATATGTGCTTTTAGGTG
3' ss Score
10.27
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
GTTTTACCCGCTAACCCAGAGGAGTCCTGGCAAGTGTACAGCTCGGCTCAGGACAGCGAGGGCAGATGTGTGTGTACAGTCGTGGCACCTCAGCAGACCATGTGCTCGAGAGATGCCCGCACCAAACAACTGCGCCAACTACTGGAGAAG
Seq A exon
GTGCAAAACATGACGCAATCAATCCAAGTATTGGACCAGCGGACCCAGAGGGACCTGCAGTACGTGGTAAAGATGGAGGATCAACTCCGTGGCCTGGAGACCAAATTCAGACAGGTGGAAGAGAACCACAAACAAAACATCGCCAAGCAATACAAG
Seq C2 exon
GCCATAAAGGCAAAAATGGCAGAGCTGCGTCCGCTAATCCCCGTCCTGGAGGAGTACAAAGCTGACGCTCGACTGGTCCAGCAGTTTAAGGAGGAGGTGCAGAATCTGACTGCGAGTCTCGGCCTCCTCCAGCAGGAGATGGGAGCTTATGACTATGATGACCTGCACTCCCGCGTGGTCAGTCTGGAGGAGCGGCTGCGAGCATGCATGCAGAAACTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014053-'6-7,'6-5,7-7=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=0.119 C2=0.000
Domain overlap (PFAM):
C1:
PF0081212=Ephrin=FE(44.1=100),PF123083=Noelin-1=PU(46.5=94.0)
A:
PF0081212=Ephrin=PD(46.3=96.2),PF123083=Noelin-1=FE(50.5=100)
C2:
PF123083=Noelin-1=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGGGCAGATGTGTGTGTAC
R:
TAAGCTCCCATCTCCTGCTGG
Band lengths:
243-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]