HsaEX1026578 @ hg38

Exon Skipping

Gene

ENSG00000130558 | OLFM1

Description

olfactomedin 1 [Source:HGNC Symbol;Acc:HGNC:17187]

Coordinates

chr9:135090195-135098505:+

Coord C1 exon

chr9:135090195-135090344

Coord A exon

chr9:135095864-135096019

Coord C2 exon

chr9:135098286-135098505

Length

156 bp

Sequences

Splice sites

3' ss Seq

ACCTGTTGCCCTTTTGACAGGTG

3' ss Score

9.27

5' ss Seq

AAGGTATGC

5' ss Score

9.55

Exon sequences

Seq C1 exon

GTGCTGCCCACCAACCCTGAGGAGAGCTGGCAGGTGTACAGCTCTGCCCAGGACAGCGAGGGCAGGTGTATCTGCACAGTGGTCGCTCCACAGCAGACCATGTGTTCACGGGATGCCCGCACAAAACAGCTGAGGCAGCTACTGGAGAAG

Seq A exon

GTGCAGAACATGTCTCAATCCATAGAGGTCTTGGACAGGCGGACCCAGAGAGACTTGCAGTACGTGGAGAAGATGGAGAACCAAATGAAAGGACTGGAGTCCAAGTTCAAACAGGTGGAGGAGAGTCATAAGCAACACCTGGCCAGGCAGTTTAAG

Seq C2 exon

GCGATAAAAGCGAAAATGGATGAACTTAGGCCTTTGATACCTGTGTTGGAAGAGTACAAGGCCGATGCCAAATTGGTATTGCAGTTTAAAGAGGAGGTCCAGAATCTGACGTCAGTGCTTAACGAGCTGCAAGAGGAAATTGGCGCCTATGACTACGATGAACTTCAGAGCAGAGTGTCCAATCTTGAAGAAAGGCTCCGTGCATGCATGCAAAAACTAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000130558-'16-19,'16-14,25-19

Average complexity

C2

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.143 A=0.201 C2=0.002

Domain overlap (PFAM):

C1:

PF123083=Noelin-1=PU(46.5=94.0),PF0154011=Lipoprotein_7=PU(17.0=52.0),PF131661=AAA_13=PU(10.1=30.0)

A:

PF123083=Noelin-1=FE(50.5=100),PF0154011=Lipoprotein_7=FE(33.3=100),PF131661=AAA_13=FE(34.5=100),PF138741=Nup54=PU(41.4=92.3),PF045137=Baculo_PEP_C=PU(37.7=88.5)

C2:

PF123083=Noelin-1=PD(0.1=0.0),PF0154011=Lipoprotein_7=FE(47.7=100),PF131661=AAA_13=FE(49.3=100),PF138741=Nup54=PD(56.9=89.2),PF045137=Baculo_PEP_C=FE(59.8=100),PF045087=Pox_A_type_inc=WD(100=28.4)

Main Inclusion Isoform:

ENSP00000360858