BtaEX6047769 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047998 | COL5A1
Description
collagen, type V, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2209]
Coordinates
chr11:106893665-106897489:-
Coord C1 exon
chr11:106897436-106897489
Coord A exon
chr11:106894565-106894618
Coord C2 exon
chr11:106893665-106893772
Length
54 bp
Sequences
Splice sites
3' ss Seq
GGCTGACTCTCTCTTCGCAGGGT
3' ss Score
9.56
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GGGCCCCCAGGCAAGGACGGGCTCCCGGGGCACCCTGGACAGCGAGGCGAGACG
Seq A exon
GGTTTCCAAGGCAAGACCGGCCCTCCAGGCCCCCCAGGTGTGGTCGGCCCTCAG
Seq C2 exon
GGTCCCACCGGGGAAACTGGTCCCATGGGCGAGCGTGGCCACCCTGGGCCCCCAGGCCCCCCCGGTGAACAGGGGCTCCCGGGCCTGGCCGGGAAAGAAGGGACGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047998-'44-50,'44-49,46-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(23.6=100)
A:
PF0139113=Collagen=PD(19.4=77.8),PF0139113=Collagen=PU(24.3=94.4)
C2:
PF0139113=Collagen=FE(50.0=100),PF0139113=Collagen=PU(6.9=13.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCTGGACAGCGAGGC
R:
CTTCGTCCCTTCTTTCCCGG
Band lengths:
132-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]